KEGG   Cavia porcellus (domestic guinea pig): 100732344
Entry
100732344         CDS       T07777                                 
Symbol
Lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
cpoc  Cavia porcellus (domestic guinea pig)
Pathway
cpoc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpoc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100732344 (Lsm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpoc03019]
    100732344 (Lsm1)
Messenger RNA biogenesis [BR:cpoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100732344 (Lsm1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100732344 (Lsm1)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 100732344
NCBI-ProteinID: XP_003462927
Ensembl: ENSCPOG00000032671
UniProt: A0A286XXZ9
LinkDB
Position
Unknown
AA seq 133 aa
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR
GLSIPRADTLDEY
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaactatatgcccggcaccgccagcctcatcgaggacatcgacaaaaaacatttggtc
ctgcttcgagatggaaggacacttataggctttttaagaagcattgatcaatttgctaac
ttagtgctacatcagactgtggaacgtattcatgtgggcaaaaaatacggtgatattcct
cgagggatttttgtggtcagaggagaaaatgtggtcctcctaggagaaatagatttggag
aaggagagcgacacacccctccagcaagtgtccatcgaggagatcctggaagagcagaga
gtagagcagcagaccaagctggaagcggagaagctgaaggtgcaggcgctgaaggatcga
ggcctctccatcccccgagcagacactctggatgagtactga

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