Cavia porcellus (domestic guinea pig): 100732346
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Entry
100732346 CDS
T07777
Symbol
Col6a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc04151
PI3K-Akt signaling pathway
cpoc04510
Focal adhesion
cpoc04512
ECM-receptor interaction
cpoc04820
Cytoskeleton in muscle cells
cpoc04974
Protein digestion and absorption
cpoc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100732346 (Col6a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100732346 (Col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100732346 (Col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100732346 (Col6a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100732346 (Col6a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100732346 (Col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpoc04147
]
100732346 (Col6a1)
00536 Glycosaminoglycan binding proteins [BR:
cpoc00536
]
100732346 (Col6a1)
Exosome [BR:
cpoc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100732346 (Col6a1)
Glycosaminoglycan binding proteins [BR:
cpoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100732346 (Col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
100732346 (Col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
100732346
NCBI-ProteinID:
XP_023417878
Ensembl:
ENSCPOG00000030777
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MRLAGVLLPLLLQACWVATQDNQIASKAIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIHGLTRMPAGRDELKTNVDAI
KYFGKGTYTDCAIKKGLEELLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQNPDAEETITQTIETIVDMIK
NNVEQVCCSFECQAARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGLDGMKGETGYPGLPGCKGSPGFDGVQGPPGP
KGDAGAFGLKGAKGEAGAIGEPGRPGSSGPAGDEGEPGDPGPPGEKGEAGDEGNAGPDGP
PGERGGPGERGPRGTPGVRGPRGDPGEAGPQGDQGREGPVGIPGDPGEAGPIGPKGYRGD
EGPPGPEGLRGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGLNGTK
GYPGLKGDEGEPGDPGEDNNDISPRGAKGAKGYRGPEGPQGTPGHVGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSRDELVKFEPGQSHA
GVVQYSHNQMQEHVDLRSPNIRNAQDFKEAVKKLQWMAGGTFTGEALQYTRDRLLPPTXD
DRIALFITDGRSDTQRNTTPLSVSLGNDVWLQVTQMSHSDRAQQTRNSRSRLGQQCSTEV
FGVRGIVALPNAGSLRWATSTMDTHSCPPCPVTFSAPADITIMLDGSASVGSHNFEVTKR
FAKRLAERFLSAGREDPTVDVRVAVVQYSGPGQQRPGQPALQFLQNYTVLASVVDGMDFF
NDATDVNDALSFVTRFYRETSSGAAKKRVLLFSDGNSQGATAAAIEKAVQEAQRAGIEIF
VVVVGRQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPDYQALLRGVFYQTVSRKVALG
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaggttggcaggtgtcctgctgcccctgctgctgcaggcctgctgggtggccacacag
gacaaccagatagcttcgaaggccatcgccttccaagactgcccggtggacctgttcttc
gtgctggacacctctgagagtgtggctttgcgactgaagccctatggggccctggtggac
aaggtcaagagcttcaccaagcgcttcatcgacaacctgagagacaggtactaccgctgc
gaccgaaacctggtgtggaacgcaggtgcactgcactacagcgacgaggtggagatcatc
cacgggctcacacgcatgcctgccggccgcgacgaactcaagaccaacgtggatgccatc
aagtacttcggcaagggcacctacacagactgtgccatcaagaaggggctggaggagctg
ctggtggggggctcccacctcaaggagaacaagtacctgattgtggtgacagatgggcac
cccttggagggctacaaggagccatgtgggggcctggaggatgccgtgaacgaggccaag
cacctgggcatcaaggtcttctctgtggccatcacacctgatcacctagagccacgcctg
agcatcattgccactgaccacacctaccggcgcaacttcacagctgcagactgggggcag
aaccctgacgccgaggagaccatcacccagaccatcgagaccatcgtggatatgattaaa
aacaacgtggagcaagtgtgctgctccttcgagtgccaggctgccagaggacctccaggg
ccccggggcgaccctggttatgagggagaacgtggaaagccaggcctccctggagagaaa
ggagaagctggagaccccggacgacccggggaccttggacctgttgggtaccagggcatg
aagggagagaaggggagccgtggggagaagggttccaggggacccaagggctacaaggga
gagaagggcaagcgtggcatcgacgggctagacggcatgaagggagagacagggtaccca
ggcctgccaggctgcaagggttctccaggattcgacggagtccaaggacccccagggccc
aaaggtgatgcaggtgccttcggactgaagggagcaaagggagaagctggagccattgga
gagccaggaaggcctgggagctcaggaccagcaggagatgagggtgagcctggagatcct
ggtcccccaggagaaaaaggcgaggctggcgatgaggggaacgcgggcccagatggccct
cccggagagaggggtggccctggagagagaggacctcgggggaccccaggtgtgcggggg
ccaagaggagacccgggcgaagctggaccccaaggtgaccagggacgagaaggccctgtc
ggcatccccggagacccgggtgaagctggacccatcggacctaaaggataccgaggtgac
gagggccccccagggcccgagggtctcagaggagccccaggacccgctggaccccctgga
gaccccggactgatgggtgagaggggtgaagatggcccccctggaaatggcaccgagggc
ttccctggctttcctggctatcctggcagcaggggccccccagggctgaacggcacgaaa
ggctaccctggcctcaagggggacgaaggcgaacctggggaccctggagaggacaacaat
gacatttcaccccgtggggccaaaggggcaaaaggctaccgtggtccagaaggcccccag
ggtaccccaggacacgtgggaccacctggaccagatgagtgtgagattttggacatcatc
atgaagatgtgctcctgctgcgagtgcaaatgtggccccatcgacatcctcttcgtgctg
gacagctcggagagcatcggcctgcagaacttcgagatcgccaaggatttcatcatcaag
gtcattgaccggctaagccgggatgagctggtcaagtttgagcctggccagtcgcatgca
ggcgtggtgcagtacagccacaaccagatgcaggagcatgtggacctgcggagccccaac
atccggaatgctcaggacttcaaggaggccgtcaagaagctgcagtggatggcaggcggc
acgttcacgggtgaggcactgcagtacacacgtgaccggctgctgccacccaccncggat
gatcgcatcgccctgttcatcaccgatggtcgctcagacacccagcggaacaccacaccc
ctcagcgtcagtctcggcaatgacgtatggctgcaagtgacacaaatgtcacattctgat
agagcacagcagacaagaaactcccggagtagacttggacaacagtgcagcacggaggtc
tttggggttagggggattgtggccttgccgaatgcaggcagcctcagatgggccacctcc
accatggacactcacagctgcccaccctgtccagtcacattttctgccccggctgacatc
actatcatgctggatggctcagccagcgtgggcagccacaacttcgaagtcaccaagcgc
tttgccaagcgcctggctgagcgcttcttatctgcgggccgggaggaccccacagtggat
gtgcgcgtggcagtggtacagtacagcggccctggccagcagaggcccgggcagccggcc
ttgcagttcctgcagaactacacagtgctggccagcgtggtggatggcatggatttcttc
aatgacgccaccgatgtcaacgatgccctgagcttcgtgacacgcttctaccgggagacc
tcctcaggtgctgccaaaaagcgggtgctgctgttctcagatggcaactcacagggcgcc
acagcagcggccatagagaaggcggtgcaggaggcacagcgggcgggcatcgagatcttc
gtggtggtggtaggccgccaggtgaacgagcctcacatccgggtgctggtcaccggcaag
acagccgagtatgacgtggccttcggtgagcgccacctgttccgtgtgcccgactaccag
gccctgctccgcggagtcttctaccaaacggtctccaggaaggtggcgctgggctag
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