Cavia porcellus (domestic guinea pig): 100732506
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Entry
100732506 CDS
T07777
Symbol
Cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X4
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03015
mRNA surveillance pathway
cpoc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100732506 (Cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100732506 (Cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100732506 (Cpsf6)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100732506 (Cpsf6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
100732506
NCBI-ProteinID:
XP_003476144
Ensembl:
ENSCPOG00000015201
UniProt:
A0A286X951
LinkDB
All DBs
Position
Unknown
AA seq
551 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPTNSGMPTSDSRGPPPTDPYGRAPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNR
NRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDR
ERDREREYRHR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggaccatatagatatctacgcggatgtgggcgaagagttcaaccag
gaagcggaatatggtgggcatgatcagatagacttgtatgatgatgtcatctccccatct
gcaaataatggagatgctccagaagaccgggattacatggatactcttccaccaactgtt
ggtgatgacgtggggaaaggagctgcaccaaatgttgtctatacatatactggaaagaga
attgcattatatattggaaatttaacttggtggacaacagatgaagacttaactgaagca
gttcattctttgggagtaaacgatattttggagataaaattttttgaaaatcgggcaaat
ggccagtcaaaaggatttgcacttgttggtgttggatctgaagcatcttcaaaaaagtta
atggatctgttgcctaaaagagaacttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggccctccaggaggcagttcacgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcccggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccttttccagctggacagactccaccacgcccaccc
ttaggtcctcctggcccacctggcccaccaggtcctcctcctcctggtcaggttctgccg
cctcctctagctgggcctcctaatcgaggagatcgccctccaccaccagttctttttcct
ggacagccttttgggcagcctccattgggtccacttcctcctggacctccacctccagtt
ccaggttatggcccccctcctggcccaccacctccacaacaaggaccaccgccacctcca
ggcccctttccacctcgcccaccaggtccacttgggccaccccttacacttgctcctcct
ccgcatcttccgggaccacctccaggtgccccaccgccagctccacatgtgaatccagct
ttctttcctccaccaactaacagcggcatgcctacatcagatagtagaggtccaccacca
acagacccatatggccgagctccaccatatgataggggtgactatggcccccctgggagg
gaaatggatactgctagaactcctttgagtgaagcagagtttgaagaaatcatgaataga
aatagggcaatctcaagcagtgctatttcaagagctgtgtctgatgccagtgctggtgat
tacgggagtgctattgagacattggtaactgcaatttctttaattaaacaatccaaagtc
tctgctgatgaccgttgcaaagttcttattagctctttgcaagattgccttcatggaatt
gaatccaagtcatacggttctggatcgagacgtgaacgatcaagagagagggaccatagt
agatcacgagaaaagagtcggcgtcataaatcccgtagtagagatcgtcatgatgattat
tatagagagagaagcagggagagagagagacaccgtgaccgggaccgagaccgtgaccgg
gagcgtgaccgagagcgagagtatcgtcatcgttag
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