Cavia porcellus (domestic guinea pig): 100733009
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Entry
100733009 CDS
T07777
Symbol
Prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100733009 (Prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoc03041
]
100733009 (Prpf4)
Spliceosome [BR:
cpoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100733009 (Prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
Ge1_WD40
WD40_like
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
100733009
NCBI-ProteinID:
XP_003463843
Ensembl:
ENSCPOG00000010747
UniProt:
H0VHL0
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MASSRASSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA
DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGISFSPNGYH
IAAGRGDNTCKVWDLRQRRCIYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcgcgagcctcttccacggcaaccaaaactaaagcacccgatgacttagtc
gctcctgttgtgaagaaaccacacatctattatggaagtttggaagagaaggaaagggaa
cgccttgccaagggagagtctggaattttgggaaaagaaggacttaaagcaggcattgaa
gcaggaaatattaatataacttctggagaggtatttgaaattgaagaacacatcagtgag
cgacaggcagaagtattggctgagtttgaaagaaggaagcgagctcgacaaatcaacgtt
tccacagatgactcagaagtcaaggcttgcctcagagccttgggggaacccatcacactt
tttggagagggccctgctgaaagaagagaaaggttaagaaatattctctcagtggttggc
actgatgccttaaaaaagacaaaaaaagatgatgagaaatctaagaagtccaaagaagag
tatcagcaaacctggtaccatgaaggaccaaacagcctgaaggtggctagactgtggatt
gctaattattcactgcccagggcaatgaaacgcttggaagaggcccgtctccataaagag
attcctgagacaactagaacatcccagatgcaagagctgcacaaatccctccggtctttg
aataatttctgcagccaaattggggacgatcggcctatctcctactgtcactttagtccc
aattccaaaatgctggccacagcttgttggagtgggctttgcaagctctggtctgttcca
gattgtaacctccttcacactcttcgaggtcataatacaaatgtaggagcaattgtattt
catcccaagtccactgtgtcattggatcagaaagatgtcaacctggcctcttgtgctgct
gatgggtctgtgaagctctggagtcttgacagtgatgaaccagtggcagatattgaaggc
cataccgtgcgtgtagcccgagtaatgtggcatccatcaggacgtttcctgggcaccacc
tgctatgatcgttcatggcgcttatgggatttggaggctcaagaggaaatcctgcatcag
gagggtcacagcatgggtgtatatgacattgccttccatcaagatggctctttggctggc
actgggggcctggatgcatttggtcgagtttgggacctgcgcacaggacgttgcatcatg
ttcctagaaggccacctaaaggaaatctacggaataagtttttcccccaatggctaccac
attgcagctggcagaggtgacaatacctgcaaagtgtgggaccttcgacagcggcgttgc
atctataccatccctgcccatcagaacttagtgaccggggtcaagtttgagcctatccat
gggaacttcttgctcactggtgcctatgacaacacagccaagatctggacccacccgggc
tggtccccgctgaagactctggcaggccacgaaggcaaagtcatgggtctggacatttct
tctgatgggcagctcatagccacttgctcatatgataggaccttcaagctctggatggct
gaatag
DBGET
integrated database retrieval system
