Cavia porcellus (domestic guinea pig): 100733184
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Entry
100733184 CDS
T07777
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100733184 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpoc04147
]
100733184 (Col18a1)
00535 Proteoglycans [BR:
cpoc00535
]
100733184 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
cpoc00536
]
100733184 (Col18a1)
Exosome [BR:
cpoc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100733184 (Col18a1)
Proteoglycans [BR:
cpoc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100733184 (Col18a1)
Glycosaminoglycan binding proteins [BR:
cpoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100733184 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
100733184
NCBI-ProteinID:
XP_013000457
LinkDB
All DBs
Position
Unknown
AA seq
1488 aa
AA seq
DB search
MAPKPSGCLVLLLACCLTPTWATLLPLEWLWSSTTSDSTATPVSQPQGHPSQRGPTEPTT
APASTQLALKEQEVTWSKSSASHVTPSSLAASAGSLDLKEEENIAGVGAKILNVAQGIRS
FIQLWDDAAPTGASAATSTPTEPHTLEGPYSDSQDSGPTLWSNLGAPWVLGTQTAEAGAL
AMPTQLPPSLESTSQEVGLLQLLGEPLPQQITAISDPEVGPAYIFGPDANNGQVARYHVP
SPFFRDFSLLFHVRPDTGAAGMLFAITDASQAAVMLGVKLSGVQDQHQNISLLYMEPGAS
QTRTAASFRLPAFVGQWTRFALSVEGSSVALYVDCEEFQRLPFTRSPRGLELEPGAGLFV
GQAGGADPDKFQGAIAELWVRADPRVSPVRCQDEEDEDEDRASGDLGSGLEEHQELHRED
VVVTQTPSLPPPPPVTTPPLARGSGKEDGKEDARTEELEVPSTVAPSEHEALPGKTLPGN
EWDKRALSPGSSLETGGLKGQKGEPGAQGPPGPVGPQGPVGPGMHSPDTHSVPGPQGPPG
HPGPPGKDGAPGRDGEPGDPGEDGRPGDAGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGP
QGPPGPPGPSFRHDKLTFVDMEGSGFSGDLETLRGPRGFPGPPGPPGVPGLPGEPGRFGV
NGSHVPGPPGLPGVSGRDGAPGFPGSPGPPGPPGREGPPGRAGEKGTLGNAGAPGPKGSK
GDPGPVGAPGENGFTGAPGPAGPPGPPGPPGPPGPPGQGFAAGFDDMEGSGAPFWSTARG
SAELQGPPGLPGLKGDPGVPGPPGDKGEVGADGTRGFPGLPGSEGPAGPMGPKGEKGSPG
EKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDRALASVPGPEGRPGFAGFPGPAGPKGDE
GSKGAQGSPGPKGEKGEPGGIFGPDSRALGPVQKGAKGEPGFRGPPGPYGRPGHKGEIGF
PGRPGRPGMNGLKGEKGEPGDATLGFGMRGMPGPPGPPGPPGPPGTPVYDSNAFVESSRP
GPPGAQGLPGPSGPKGDKGDVGQPGPPGKFPLDLFHLGAEMKGEKGERGDAGQKGERGAP
GASSGFFGSSVPGPPGPPGYPGIPGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGP
PGPPSFPGPHTQTISIPGPPGPPGPPGPPGAMGTSSGVRAWTTYEAMLEKVREVPEGWLI
FVAEDEELYVRVRNGVRKVLLEARMPLPPETDNEVAALQPPLVQLHEGGPYPRREHSYST
ARPWRADDILASPPRLPDPRPYPGVPHHHGAYVHLRPTSPTGSAAHSHQDFQPVLHLVAL
NSPLPGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGAVPIVNLR
DEVLSPSWEALFSGSQGQLKPGARIFSFDGRDVLRHPAWPQKNVWHGSDPSGRRLTESYC
EAWRTEAVAATGQASSLLSGRLLEQSASSCRKAYIVLCIENSFMMPSK
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggctcccaagcccagcggatgcctggtgctgctgcttgcctgctgcctgacgcccacc
tgggccaccctgctgcccctggaatggctctggtcctcaacgaccagtgactccacagcc
actccggtctcccagccccagggccacccctcccagcgtggccccacggagccaacgaca
gcccctgccagcacccagctggccttgaaggaacaggaggtcacctggagcaagagctct
gcttcccacgtcaccccctccagcctggctgcctctgccgggagcctggatttgaaggag
gaggagaacatcgcaggcgttggtgccaagatcctgaatgtggctcagggcattcggagc
ttcatccagctgtgggacgatgctgcccccaccggggcctctgctgccacctcaacccct
acagagccgcacaccctcgagggaccctatagtgactcccaggacagtgggcctaccctc
tggtccaatctgggagccccatgggttctgggtactcagacagcggaggctggtgccctg
gccatgcccacccagctacctccatctctggagagcaccagccaggaggtggggctgctg
cagctccttggggagcccctgccccagcagatcacagccatcagtgaccccgaggtcggg
ccagcctatatctttggaccagatgccaacaatggccaagtggcccggtaccacgtgccc
agccccttcttccgtgacttctcgctgctgttccacgtgcgaccagacacgggggctgcg
ggcatgctgtttgccatcacagacgcgtcgcaagcagccgtgatgctgggcgtgaagctc
tcaggggtgcaggaccagcaccagaacatctcactgctctacatggagccgggtgccagc
cagacccgcacggctgccagcttccgcttgcctgcctttgtgggccagtggacccgtttt
gcgctcagcgtggaaggcagctctgtggcgctctatgtggactgcgaggagtttcagagg
ctgccattcacacggtccccacggggtctggagctggagcctggcgctggcctctttgtg
ggccaggctggaggcgcagaccccgacaagttccagggggcgattgcagagctatgggtg
cgtgctgatccccgggtgagccctgtgcgctgccaggatgaggaggatgaggatgaagac
agggcatctggtgacttgggcagtggcctagaggagcaccaagaacttcacagggaggac
gtggtggtgacgcagacacccagcctgcccccaccaccccccgtgacgactcctcccctg
gccaggggcagtggcaaggaagatggcaaggaagatgccaggacagaggagctcgaggtg
ccaagcacggtggctccatcagagcatgaagctcttcctgggaagacccttccgggtaac
gagtgggacaagcgtgctctgagcccaggcagcagcctggagacgggaggcctgaagggg
cagaagggggagccaggagctcagggtccacctggcccggtcggtccccagggccctgta
ggccctgggatgcacagccccgacacacactctgtccctgggcctcagggccccccagga
caccctggtcctccagggaaggacggcgccccaggaagggacggcgagccgggtgatccc
ggtgaggacggaagaccaggggatgctgggccacagggcttcccagggaccccaggggat
gtgggccctaagggagagaagggagatccaggggttggaccaagaggacccccagggccc
caaggtcctccagggcccccaggaccatccttcaggcatgacaagctgacctttgtcgac
atggagggatctggcttcagtggtgacctggagaccctcaggggcccacgaggcttccca
ggtcccccgggcccccctggagtcccaggcctgcctggtgaacctggccgctttggggtg
aatggctcccacgtcccaggacccccaggcctcccgggtgtgtctgggagggacggcgcc
ccaggatttcctggatctccgggacccccaggccctcctggaagagagggtcctccagga
agagcgggcgagaaaggaacccttggcaacgcaggagcccctggacccaagggcagcaag
ggagacccaggccctgtgggtgctcccggggagaatggctttacaggagcccctgggccc
gctggacccccaggacccccaggacccccaggacctcccgggccccctggacaaggattc
gctgcgggatttgatgacatggaaggctctggagcccccttctggtcaacagcccgaggc
tccgcagagctccagggaccacctggccttccaggactcaagggagatcctggtgtgcct
gggcctcctggagacaaaggggaagttggagcagatggcacccgcgggttccctggcctc
ccaggcagtgaaggcccagctgggcccatgggacccaaaggagagaaagggagtccggga
gaaaaaggtgacccagggaaggacggcgtgggccagcctggcctccccgggcccccagga
cccccgggccccgtggtctatgtgtcggaacaggaccgagcactggccagtgtgccaggt
cctgagggcaggccgggctttgcaggcttccctggacctgctgggccaaagggcgacgag
ggctccaaaggcgcacagggctccccgggacccaagggtgagaaaggggagccaggtggc
atctttggccctgacagcagagccctgggtcctgtgcagaagggagccaagggtgagcct
ggcttccgtggacccccgggaccatatggacggcctgggcacaagggagaaatcggcttt
cctggacggccgggtcgccctggaatgaatgggctgaagggtgagaagggggagcctgga
gacgccaccctcggatttggcatgaggggcatgcctggccccccaggacctcctggcccc
cccggaccccctgggacgcctgtctatgatagcaacgcattcgtggagtctagtcgtcct
ggacctccaggagcacaagggttgccagggccttctgggcccaagggtgacaaaggagat
gttggtcagcctggaccaccagggaagttccccttggacctgttccacctgggagctgaa
atgaagggtgagaaaggggagcgtggggacgccggacagaagggcgagcggggagcacct
ggggccagcagcggcttctttggctccagtgtgcctggcccccctgggccgccagggtac
cctgggattccgggtcccaagggagagagcatccggggcccgcctggcccacctggccct
cagggacctcctggcattggctatgaggggcgccagggcccccctggccctcctgggccc
cctgggcccccctcatttcctggcccacatacgcagactatcagcattcctggacctcct
ggtcctcctgggcccccaggacccccaggggccatgggcacctcttcaggggtgagggcc
tggaccacctacgaggccatgctggagaaggtgcgtgaggtgcccgagggctggctcatc
ttcgtagctgaggacgaggagctctacgtccgcgtccgcaatggggtccgcaaggtcctg
ctggaggcccggatgccgctcccgcctgagacggacaatgaggtggctgccctgcagccc
ccactggtgcagttgcatgagggcggtccatacccacggcgggagcactcctactctacc
gcacggccctggcgggcagatgacatcctggccagccccccacgcctgccagacccccgg
ccctatcccggagtcccacaccaccatggcgcctatgtacatcttaggccaaccagccca
acaggctcagcagctcactcccaccaggacttccagccagtgctccacctggtggcactc
aacagcccactgccaggtggcatgcgtggcatccgtggggccgacttccagtgcttccag
caggcgcgagccgtggggctgagcggcaccttccgagccttcctctcctcccggctgcag
gacctctacagcattgtacggcgtgcggaccgaggggccgtgcccattgtcaacctcagg
gatgaggtgctgtctcccagctgggaagccctgttctcgggctcccagggccagctgaag
cctggggcccgcatcttctcttttgatggcagagatgtcctgagacacccggcctggccc
caaaagaacgtgtggcacggctctgaccccagcgggcgccggctgaccgagagctactgt
gaggcgtggcggacagaggcagtggcagccacaggccaggcttcttcactgctgtccggc
aggctgctggagcagagtgcctcgagctgccgcaaagcctacatcgtgctctgcatcgag
aacagtttcatgatgccctccaagtag
DBGET
integrated database retrieval system
