Cavia porcellus (domestic guinea pig): 100733209 Help Entry 100733209         CDS       T07777                                  Symbol Col1a1 Name (RefSeq) collagen alpha-1(I) chain   KO K06236   collagen type I alpha Organism cpoc  Cavia porcellus (domestic guinea pig) Pathway cpoc04151   PI3K-Akt signaling pathway cpoc04510   Focal adhesion cpoc04512   ECM-receptor interaction cpoc04611   Platelet activation cpoc04820   Cytoskeleton in muscle cells cpoc04926   Relaxin signaling pathway cpoc04933   AGE-RAGE signaling pathway in diabetic complications cpoc04974   Protein digestion and absorption cpoc05146   Amoebiasis cpoc05165   Human papillomavirus infection cpoc05205   Proteoglycans in cancer cpoc05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:cpoc00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     100733209 (Col1a1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100733209 (Col1a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100733209 (Col1a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     100733209 (Col1a1)  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     100733209 (Col1a1)   09152 Endocrine system    04926 Relaxin signaling pathway     100733209 (Col1a1)   09154 Digestive system    04974 Protein digestion and absorption     100733209 (Col1a1)  09160 Human Diseases   09161 Cancer: overview    05205 Proteoglycans in cancer     100733209 (Col1a1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     100733209 (Col1a1)   09174 Infectious disease: parasitic    05146 Amoebiasis     100733209 (Col1a1)   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     100733209 (Col1a1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     100733209 (Col1a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cpoc00536]     100733209 (Col1a1) Glycosaminoglycan binding proteins [BR:cpoc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100733209 (Col1a1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC FnI_RECK Fn1_2 Motif Other DBs NCBI-GeneID:  100733209 NCBI-ProteinID:  XP_023419625 Ensembl:  ENSCPOG00000003329 LinkDB All DBs Position Unknown AA seq 1461 aa AA seqDB search MFSFVDLRLLLLLAATALLTHGQQQVVDQDRDIPGVECVHNGRRLANGDTWKPDPCHLCI CNNGTALCEEMTCKDSINCPGAEIPDGECCPQCPDGPESALDLVNSGVQGPKGDPGPRGL RGPAGPPGRDGIPGRPGLPGPPGPAGPPGPPGLGGNFAPQMSYGYDEKSVGAAVPGPMGP SGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGAPGKNGDDGEPGKPGRPGE RGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGP RGLPGERGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGESGPQGARGS EGPQGARGEPGPPGPAGAAGPAGNPGSDGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP SGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGIQGPPGPAGEEGKRGARGEPGPAGLPGP PGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGS PGSPGPDGKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGV PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQGA PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGTPGKDGPRGLTGPIGPPGPAGASGDKGE TGPSGPPGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP AGPAGPPGPIGNVGAPGSKGARGSPGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGK EGAKGVRGETGPAGRPGEAGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGL PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPAGPPGLAGPPGESGREGSPGAEGS PGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGA RGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP PGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFLPQ PPQEKSGDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLK MCHPDWKSGEYWIDPNQGCNLDAIKVFCNMETGESCVYPIQPTVPQKVWYISKNPKEKQH VWFGESMEGGFQFEYGSTDSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYLDQKTGN LKKSLLLQGSNDIELRGEGNSRFTYVALEDGCTSHTGASGKTVIEYRTTKTSRLPIIDVA PLDIGAPDQEFGFTVSPACFV NT seq 4386 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg cacggccaacagcaagttgtggaccaagacagagacatcccaggcgtcgagtgcgtccac aatggccgcaggctcgccaacggagacacctggaaacccgacccctgccacctctgcatc tgcaacaacggcaccgcgctgtgcgaagagatgacctgtaaggactctatcaactgtccc ggcgccgaaatccccgatggcgagtgctgtccccagtgccccgatggtccagaatcagcc ctggacctagtcaactccggagtccagggacctaagggagaccccggcccccgaggcctt aggggacccgctggccccccaggaagagatggcatccctggacgtcctggccttcctggg ccccccggccccgctggacctcccggtccccctggccttggcggaaacttcgctccccag atgtcttacggctatgatgagaaatcagtcggagctgccgtgcctggccccatgggccct tcaggtcctcgtggtctccctggcccccctggtgcacctggtccccaaggtttccaaggc ccccctggtgagcccggcgagcctggagcttcaggtcccatgggtccccgaggtcctccc ggcgcccctggcaagaatggcgatgatggagaacctggcaagcctggtcgccccggtgag cgtggccctcctggacctcagggtgctcggggattgcccggaacagctggccttcctgga atgaagggacacagaggtttcagtggtctggatggtgccaagggagatgctggtcccgct ggtcccaagggtgagcccggcagccctggtgagaacggagctcctggccaaatgggcccc cgaggtctgcctggtgagagaggtcgccctggacctcctggcccagctggtgctcgtgga aatgatggtgctactggtgctgctgggccccccggtcccactggccctgctggtcctcct ggcttccctggtgctgttggagcaaagggtgaatctggtccccaaggagcccgaggctct gaaggtccccagggtgctcgtggtgagcctggtccccctgggcctgctggtgctgctggt cctgctggaaaccctggttctgacggacaacctggtgctaaaggtgccaatggcgctcct ggcattgctggtgctcctggcttccctggtgcccgaggcccctctggtccccagggcccc agtggtcctcccggtcccaagggtaacagcggtgaacctggtgctcccggcagcaaagga gacactggtgccaaaggagaacccggccccgttggtattcaaggtccccctggccctgct ggggaagaaggaaagcgtggtgcccgaggtgaacccggacctgctggcctgcccggcccc cctggcgagcgtggtggacccggaagccgaggcttccctggtgcagatggcgtggctggt cccaagggtcctgctggcgaacgcggttcccctggccctgctggccccaaaggttcccct ggtgaagctggccgccccggtgaagccggcctgcctggtgccaagggtctgactggaagc cctggcagccccggtcctgatggcaaaactggcccccctggtcccgctggtcaagatggt cgccccggacccgcaggcccccccggtgcccgtggtcaggctggtgtgatgggattccct ggacctaaaggtgctgctggagagcctggcaaagctggagaacgaggtgtgcccggaccc cctggcgctgttggtcccgctggcaaagacggagaagctggtgctcagggaccccctggc cctgctggtcccgctggagagagaggcgaacagggccccgctggctcccccggcttccag ggtctccctggccccgctggtcctcctggtgaagcaggcaaacctggcgaacagggtgtt cctggagacctcggtgcccctggcccctccggagcaagaggcgagagaggtttccctggc gagcgtggtgtgcaaggtccccccggtcctgctggtccccgcggatccaatggtgctcct ggcaacgatggtgccaagggtgatgctggtgcccccggagctcccggtagccagggtgcc cctggtcttcagggaatgcctggtgaacgtggtgcagctggtcttccaggccccaaaggt gacagaggtgacgctggtcccaaaggtgctgatggtactcctggcaaagatggtccccgt ggtctgactggtcccattggtcctcctggccctgctggcgcctctggtgacaaaggtgaa actggtcccagtggtcctcctggtcccaccggagcccgtggtgcccccggagaccgtggt gagcctggtccccccggccccgctggcttcgctggcccccctggtgctgatggccaacct ggtgctaaaggtgaacctggtgatgctggtgctaaaggcgatgctggtcctcctggcccc gctggccctgctggcccccctggccccattggtaacgttggtgctcctggatccaaaggt gctcgtggcagccctggcccccctggtgctactggtttccctggtgctgctggccgagtt ggccctcctggcccctctggaaatgctggcccccctgggccccctggacctgctggcaaa gaaggtgccaaaggtgtccgtggtgagactggccctgctgggcgtcccggtgaagctggt ccccctggcccccctggccccgctggcgagaaaggatcccctggtgctgatggacctgct ggtgcccctggtacccccggacctcaaggtattgctggacagcgtggtgtagtcggcctg cctggacagagaggagaaagaggcttccctggccttcccggcccctctggtgagcctggc aaacaaggtccttctggagcaagcggcgaacgtggtccccctggccccgcgggcccccct ggtctggctggaccccctggtgaatctggacgtgagggttcccctggcgctgaaggctcc cctggacgagacggctctcctggccccaagggtgaccgtggtgagactggcccagctgga ccacctggtgctcctggtgcccctggtgctcccggccccgtcggccctgctggcaagaat ggcgatcgtggtgagaccggtcctgctggtcctgctggtcccatcggccctgccggtgcc cgtggccccgctggaccccaaggtccccgtggtgacaagggtgagacaggcgaacagggt gacagaggcatcaagggtcaccgcggcttctctggtcttcagggtccccctggccccccc ggctctcctggtgaacaaggtccttctggagcttctggtcctgctggtccccgtggtccc cctgggtctgctggttctcccggcaaggacggactcaacggtctccctggccccatcggt ccccccggtcctcgtggtcgcactggtgacgctggtcctgctggtccccccggccctcct ggaccccctggtcctcctggtcctcccagcggcggttacgacttgagcttcctgccccag ccacctcaagagaaatctggcgatggtggacgatactaccgggccgatgatgccaatgtg gtccgtgaccgtgatctcgaggtagacaccaccctcaagagcctgagccagcagatcgag aacatccgcagccccgaaggcacccgcaagaaccccgcccgcacctgccgtgacctcaag atgtgccaccctgactggaagagcggagagtactggatcgaccccaaccaaggctgcaac ctggacgccatcaaggtcttctgcaacatggagacgggagagagctgcgtgtaccccatc cagcccaccgtgcctcagaaggtctggtacatcagcaagaaccccaaggagaagcagcac gtctggttcggcgagagcatggaaggtggattccagttcgagtatggcagcacagactcc gaccctgctgacgtggccatccagctgaccttcttgcgcctcatgtccaccgaggcctcc cagaacatcacctaccactgcaagaacagcgtggcctacctggaccagaagaccggcaac ctcaagaagtctctgctcctccagggctccaacgacatcgagctccggggtgagggcaac agccgcttcacctacgtcgccctggaggatggctgcacgagtcacacaggcgcctcaggc aagacagtcattgaatacagaaccaccaagacctcccgcctgcccatcatcgacgtggcc cccttggacattggcgccccagaccaggaattcggctttaccgttagcccggcctgcttc gtgtaa

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