Cavia porcellus (domestic guinea pig): 100733778
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Entry
100733778 CDS
T07777
Symbol
Rbm39
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding protein 39
KO
K13091
RNA-binding protein 23/39
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoc03041
]
100733778 (Rbm39)
Spliceosome [BR:
cpoc03041
]
Common components
Common spliceosomal components
General mRNP proteins
100733778 (Rbm39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
PRP38_assoc
RRM_occluded
RBD_DEAH11
CDC45
POP1_C
Motif
Other DBs
NCBI-GeneID:
100733778
NCBI-ProteinID:
XP_023419947
Ensembl:
ENSCPOG00000039333
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
SRRRSRSKSPFRKDKSPVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGV
PIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNTTEDMLRGIFEPFGRIESIQL
MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDS
DELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQT
EASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK
NSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVP
SRR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagcaatgcttgaggctccttataagaaggatgagaac
aagttgagcagtgctaacggccatgaagaacgtagcaaaaagaggaagaaaagcaagagc
agaagtcgaagtcatgaacgaaagagaagtaaaagtaaggaaagaaagcgtagtagagat
agagaaaggaaaaagagcaaaagccgtgaacggaagcgaagcagaagcaaagaaaggaga
cggagccgctcaagaagtcgagatcgaagattccgaggccgctacagaagtccctactcc
ggaccaaaatttaacagtgccatccgaggaaagattgggttgcctcatagcatcaaatta
agcagacgacgttctcgaagcaaaagcccattcagaaaagacaagagccctgttcgagat
gtaaggatgatttctgatagaaattccagacgttcaaaaggaattgcttatgtggagttc
gttgatgttagttcagtgcctctagcaataggattaactggccaacgggttttaggagtg
ccaatcatagttcaagcatcacaggcagaaaaaaacagagctgcagcaatggcaaacaat
ttacaaaagggaagtgctggacctatgaggctttatgtgggctcattacactttaacaca
actgaagatatgcttcgggggatatttgagccttttggaaggattgaaagtatccagctc
atgatggacagtgaaacaggtcgatcaaagggatatggattcattacattttctgactca
gaatgtgcaaagaaggcattggaacagcttaatggctttgaactagcaggaaggccaatg
aaagttggtcatgttactgaacgtacagatgcttctagtgccagttcatttttggacagt
gatgaactggaaaggactggaattgacttgggaacaactggtcgtctccagttaatggct
agacttgcggaaggtactggtttgcagattccaccagctgcacaacaagctttacaaatg
agtggctctttggcatttggtgctgtggcagatttgcaaacacgactttcccaacagact
gaagcttcagctttagctgcagcagcctctgtgcaaccccttgcaacacagtgtttccag
ctatctaatatgtttaatccccaaacagaagaagaagttggatgggatacagagattaag
gatgatgtgatagaagagtgtaataaacatggaggagttattcatatttatgttgacaag
aattctgctcagggcaatgtatatgtgaaatgcccatcaattgctgcagctattgctgct
gtcaatgcattgcatggcaggtggtttgctggtaaaatgataacagcagcgtatgtacct
cttccaacttaccacaacctatttcctgattctatgacagcaacacaactactggttcca
agtagacgatga
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