Cavia porcellus (domestic guinea pig): 100734013 Help Entry 100734013         CDS       T07777                                  Symbol Lig1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism cpoc  Cavia porcellus (domestic guinea pig) Pathway cpoc03030   DNA replication cpoc03410   Base excision repair cpoc03420   Nucleotide excision repair cpoc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cpoc00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     100734013 (Lig1)    03410 Base excision repair     100734013 (Lig1)    03420 Nucleotide excision repair     100734013 (Lig1)    03430 Mismatch repair     100734013 (Lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cpoc03032]     100734013 (Lig1)    03400 DNA repair and recombination proteins [BR:cpoc03400]     100734013 (Lig1) Enzymes [BR:cpoc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      100734013 (Lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      100734013 (Lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      100734013 (Lig1) DNA replication proteins [BR:cpoc03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     100734013 (Lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      100734013 (Lig1) DNA repair and recombination proteins [BR:cpoc03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      100734013 (Lig1)    NER (nucleotide excision repair)     Other NER factors      100734013 (Lig1)    MMR (mismatch excision repair)     Other MMR factors      100734013 (Lig1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDR PucR Motif Other DBs NCBI-GeneID:  100734013 NCBI-ProteinID:  XP_003461397 Ensembl:  ENSCPOG00000004210 LinkDB All DBs Position Unknown AA seq 919 aa AA seqDB search MQRSIMSFFYPTKEGKAKKPEKDTNKSSGRETEPPPKVALKERNGVVPDNDSPVKRSGRK AAQVLSSEGEEEDEALSPSEDQKPEPDSPQGSPPNLAKCPKNSPSFSDTSPMDISSSGIP KRITARKQLPKRVIQDVLEDQNEDKDREAKKRKEEKEAETPRESLVETGAATVKEEEEGH QPSTPPEPPKAPKAEAPAKTEGVSTPKVPQKQEPQEKNQSKAAPRVSRNLSSFFTPRKPS VKTDVKQEQSGTPGKEEAKRSLDPVSYNPAKNNYHPIEDACWRQGQKVPYLAVARTFEKI EEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLTLNRLGPPQQGLELGVGDGVLLKAVA QATGRQLESVRAEAVEKGDIGLVAENSRSTQRLMLPPPPLTTSGVFSKFRDIARLTGNAS MTKKMDIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPA VVDAGKGKTTEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCRLSPGVP LKPMLAHPTRGVSEVLKRFEETAFTCEYKYDGQRAQIHLLEGGEVKIFSRNQEDNTGKYP DIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYA FDLIYLNGESLVREPLSQRRQLLRENFVETEGEFVFATSLDTKDMEQIAEFLEQSVKDSC EGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFL LAAYDEESEELQAICKLGTGFSDEQLEEHYQSLQALVLPTPRPYVRADGAVAPDHWLDPS AVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVACLYRK QSQIQNQGIDSDSDDEEFY NT seq 2760 nt NT seq  +upstreamnt  +downstreamnt atgcagcggagtatcatgtcatttttctaccccaccaaagagggtaaagcaaagaagcct gagaaggataccaacaagagcagcggcagagagacagagccccctccaaaggtggcactg aaggagcggaatggagtggtgcctgataatgactctccagtgaagaggtcagggaggaag gcagcgcaggtcttgagcagcgagggagaggaagaagatgaagccctcagccccagtgaa gaccagaagcctgagccagattccccacaagggtccccacctaacctcgccaaatgtccc aagaacagcccttccttctcggacacctcccctatggacatctcctcttcaggaatacca aagcgaattacggctcggaaacagctcccgaaacgggtaattcaggacgtcttggaggat cagaatgaggacaaagacagagaagccaagaagaggaaggaggaaaaagaagcagagact ccaagagaaagcctcgtagagactggagcagcaacagtgaaggaagaagaggaggggcat cagccctcgacaccccctgagccccccaaagcccccaaagcagaagccccagcaaagaca gaaggtgtttccacacccaaggtaccccagaagcaggagccacaggaaaagaaccagagc aaggctgcccccagagtctccaggaacctcagcagtttcttcacaccccggaagccatca gtcaaaaccgatgtgaaacaagagcagtcaggtaccccaggaaaagaggaggccaagaga tccctggacccagtgagctacaatcctgctaagaacaactaccaccccatcgaggatgcc tgctggagacagggccagaaggttccttacctggctgtggcccggacatttgagaagatt gaagaggtttctgctcggctccggatggtggagacgctgagcaacttgctgcgctctgtg gtggccctgtcccctccagacctgctccctgtcctctacctcacccttaaccgccttggg cctccccagcagggcctagagcttggcgttggtgatggtgtccttctcaaggccgtggcc caggccacaggccgccaactggaatctgtccgggctgaggctgttgagaagggagacatt gggctggtggctgagaacagccgcagtactcagagactgatgctgccaccaccccctctt accacctctggagtcttctccaagtttcgggacattgcccggctcactggcaatgcttcc atgaccaagaagatggatatcatcaaaggcctctttgttgcctgccgccactcagaagcc cggttcatcgccagggccctgagtggacggctgcgcctcgggttggctgagcagtcggtg ctggctgccctttcccaggctgtgagcctcacacccccaggccaagaattccctccggcc gtggtagatgctgggaaaggcaagaccacagaggccagaaagacatggctagaggagcaa ggcatgatcttgaagcagacattctgtgaggtacctgacctggaccgaatcatccctgtg ctgctggagcatggcctggagcgactcccggagcactgcaggctgagcccaggggtccct ctgaaacctatgttggcccatcccactcggggtgtcagtgaggtcctgaaacgctttgag gagacagccttcacctgcgagtacaaatacgatgggcagagggcacagatccatcttcta gaaggcggggaggtgaagatcttcagcaggaatcaggaagacaacacggggaagtacccc gacatcatcagccgcatccccaagattaaactcccctcagtcacatcctttatcctggac actgaagctgtggcttgggaccgggaaaagaagcagatccagccgtttcaagtcctaacc actcgcaaacggaaggaagtagatgctgcagaaatccaggtgcaggtgtgtctgtatgcc tttgacctcatctacctcaatggagagtctctggtccgtgaacccctgtcccaacgccgg cagctgctccgggagaacttcgtagagacagaaggcgagtttgtcttcgccacctctctg gacaccaaggacatggagcagattgctgagttcttggagcagtcagtgaaagactcctgc gaggggctgatggtgaagaccttggatgttgatgccacctatgagattgctaagaggtca cacaactggcttaagctgaagaaggactaccttgatggcgtgggtgataccctggatctc gtggtgattggcgcctacctgggccggggaaagcgagccggccgctatgggggtttcctg ctggctgcctatgatgaggagagcgaggagctacaagccatatgcaagcttggaacgggc ttcagtgatgagcagctggaagagcattaccagagcctgcaggccctggtgctgcccacc ccacgcccctatgtgcgggcagatggtgccgtggcgcctgaccactggctggaccccagt gccgtgtgggaggtgaagtgtgccgatctctctctctcccccatctaccctgctgcccgg ggcctggtggacagtgagaaggggatttccctccgcttccctcggtttattcgcgtacgt gaggacaagaagccagaggaggccactaccagtgcgcaggtggcctgtctgtaccgcaag caaagccagattcagaaccaaggcattgactcagactctgatgatgaagagttctactaa

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