Cavia porcellus (domestic guinea pig): 100734025
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Entry
100734025 CDS
T07777
Symbol
Col11a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc04820
Cytoskeleton in muscle cells
cpoc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100734025 (Col11a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100734025 (Col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpoc00536
]
100734025 (Col11a1)
Glycosaminoglycan binding proteins [BR:
cpoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100734025 (Col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100734025
NCBI-ProteinID:
XP_023417015
Ensembl:
ENSCPOG00000012629
LinkDB
All DBs
Position
Unknown
AA seq
1727 aa
AA seq
DB search
MEPWSSRWKTKRWLWDFTVTTLALTLLFQAREVRGAAPVDVLKALDFHSSPEGISKTTGF
CTNRKNSKGSDTAYRVSKLAQLSAPTKQLFPGGSFPEDFSILFTVKPKKGIQSFLLSIYN
EHGIQQVGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERSIVDTNGITVFGTRILDEEVFEGDIQQFLISADPKAAYDYCEHYS
PDCDSSASTAAQAQEPQIDEPTPVEDVFTEEYLTGEDYDPQRKNPEDTLYENKEIDGRDS
GLPVDGDLGEYDFYDYKEYEDKPTSPPNEEFGPGVPAETDFTETSINSHGTYGEKGQKGE
PAVVEPGMLVEGPPGPAGPAGLMGPPGSQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPG
TMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSAG
AKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG
DKGHRGERGSQGPPGSPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAG
VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADG
PPGHPGKEGQSGEKGALGPPGPQGPVGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKG
DMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPAGQAGEKGKLGVPGLPGYPGRQG
PKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDG
PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVG
PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDLGPQGIPGKDGPAGLRGFPG
ERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG
APGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG
PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKG
ENGDVGPMGPPGPPGPRGPQGPSELMXDGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE
AGTGGPKGERGEKGEAGSPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ
DGVSGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGSEGRQGEKGAKGEAGAEGP
PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPIGPPGLPGLKGDPGS
KGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGTPGPAGPIGPPGAPGLPGP
QGPKGNKGSSGPAGQKGDSGPPGPPGPPGPPGEVIQPLPILSPKKTRRHAESIQADAGDN
ILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQ
GCSGDSFKVYCNFTSGGETCIYPDKKSEGVSTNLFWWRMFTLSYVDVEGNSINMVQMTFL
KLLTASARQNFTYHCHQSVAWYDMSSGNYDKALRFLGSNDEEMSYDNNPYIKALYDGCAS
RKGYDKTVIEINTPKIDQVPIIDVMISDFGDQNQKCGFEVGPVCFLG
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggagccgtggtcctctaggtggaaaacgaaacggtggctgtgggatttcaccgtaaca
accctcgcattgactttgctcttccaagctagagaggtcagaggagctgctcctgttgat
gtactaaaagcactagattttcacagttctccagagggaatatcaaaaacaacaggattt
tgcacaaacagaaagaattcaaaaggctcagatactgcttacagagtttcaaagctagca
caactcagtgccccaacaaaacagttattcccaggtggaagttttccagaagatttttca
atattgtttacagtaaaacctaaaaaaggaattcagtctttccttttatccatatataat
gaacatggcattcagcaagttggtgttgaggttggtagatcgcctgtttttctgtttgaa
gaccacactggaaaacctgccccagaagactaccccctcttcagaactgttaacatcgct
gatgggaagtggcatcgggtagcaatcagtgtggagaagaaaactgtgacaatgattgtt
gattgtaagaagaaaaccacaaaaccacttgatagaagtgagagatcaattgttgataca
aatggaatcacagtttttggaacaaggattttggatgaagaagtttttgagggggacatc
cagcaatttttgatctccgcggaccctaaggcagcatatgactactgtgagcattatagt
ccagactgtgactcttctgcatccacggctgctcaggctcaggaaccgcagatagatgag
ccaactccagttgaagacgtttttactgaagaatatctaactggagaggattatgatccc
cagaggaaaaatcccgaggatactctatatgaaaataaagaaatagacggcagggactct
ggtcttccagtagatggagatttaggcgaatatgatttttatgactataaagaatatgaa
gataaaccaacaagcccccctaatgaagagtttggtccaggtgtaccagcagaaactgat
ttcacagagacaagcataaacagccatggtacatacggagaaaaaggacaaaaaggagag
cccgctgtggttgagcctggtatgcttgttgaagggccaccaggaccagcagggcctgcg
ggtcttatgggtcctccaggttcacaaggcccttctggaccccctggtgaccctggtgat
aggggacctccaggacgtcctggtttaccaggagctgatggtctacctggtcctcctggt
actatgttaatgttaccgtttcgttatggtggggatggttcgaaaggaccaactatctct
gctcaggaagcacaggcacaggccatactgcagcaggctcggattgcactgagaggccca
cctggcccgatgggtctgactggaagaccaggtcctgtgggaggacctgggtcagctgga
gccaagggcgagagtggtgatcctggtcctcagggccctcgaggtgtccaaggtccccct
ggtccaacaggaaaacctggaaaaaggggtcgtccaggtgcagatggaggaagaggaatg
cccggagagcctggagcaaagggagatcgagggtttgatggacttccaggtctgccaggt
gataaaggtcataggggtgaaagaggctcccaaggtcctcctggttctcctggtgatgat
ggaatgaggggagaagatggagaaatagggccccggggtcttccaggtgaagcgggccca
cgaggtttgcttggacccagaggaaccccaggacctccaggacagcctggtatcgcaggt
gtagatggcccccccggaccaaaagggaacatgggtccccaaggggagcctggacctcca
ggtcagcaaggaaatcctggacctcaaggtcttcctggtccacaaggtccaattggtcct
cctggtgaaaaaggaccacaaggaaaaccaggtcttgccggtcttcctggtgctgatggg
cctcctggtcaccctggaaaagaaggccagtctggagaaaagggtgctctgggtccacct
ggtccacagggtcctgttggctaccctggtccccgaggagtaaagggagcagatggtgtc
agaggtctcaagggatcaaaaggtgaaaagggtgaagacggctttccaggattcaaaggt
gacatgggacttaagggtgacagaggagaagttggtcaaataggcccaagaggagaagat
ggccctgagggacccaaaggtcgtgcaggcccaactggagacccaggtcctgccggccaa
gcaggagagaagggcaaacttggagttcctggattaccaggatatccaggaagacaaggt
ccaaagggttctactggatttcctgggtttccaggtgccaatggggagaaaggtgcacgg
ggagtagctggcaaaccaggccctcggggtcaacgtggaccaacgggtccccgaggttct
agaggagcaagaggtcccacggggaaaccagggccaaagggaacttctggtggtgatggt
cctcctggccctccaggtgaaagaggtcctcagggacctcagggtccagttggattccct
ggaccaaaaggccctcctggtccacctgggaaagatggactaccaggacaccctgggcaa
cgtggagagactggatttcaaggcaagactgggccccctggaccaggtggtgttgttgga
ccacagggacccactggtgagactggtccaataggtgaacgagggcatcctggccctcct
ggccctcctggtgagcaaggtcttcctggcgccgcaggaaaggaaggtgcaaagggtgat
ctaggacctcagggtatcccagggaaagatggaccagcaggattgcgtggtttcccaggt
gaaagaggacttcctggagctcagggtgcacctggtctgaaaggaggagaaggtccccag
ggcccaccaggaccagttggttcaccaggagaacgtggatccgcaggtacagctggtccc
attggtttgccagggcgtccaggaccccagggacctcctggtccagctggagaaaaaggt
gcccctggagagaaaggaccccaaggccctgcagggagagatggagttcaaggtcctgtg
ggtctccccgggcccgctggtcctgcgggctctcctggagaggatggagacaagggtgaa
attggtgaaccaggacagaaaggcagcaagggtgacaaaggagaaaatggtcctcctggt
ccccctggtctgcaaggaccagttggtgcccctggaattgctgggggcgatggtgagcca
ggtcccagaggacagcagggcatgtttggacaaaaaggcgacgagggtgcaagaggtttc
cctggaccccctggtcctataggtcttcagggtttgccaggcccacctggtgaaaaagga
gaaaatggagatgttggcccgatgggtccacctggtcctcctggtccaagaggccctcaa
ggtcccagtgagctgatgtaagatggaccacaaggacctccaggatccgttggctcagtt
ggtggtgttggagaaaagggtgaacctggagaagcagggaaccctgggccccctggtgaa
gcaggcacaggtggtcccaaaggagaaagaggagagaaaggagaagctggttcaccaggt
gctgctggacctcctggtgcaaaggggccaccgggtgacgatggccccaagggtaacccg
ggtcctgttggttttcctggagatcctggtcctcctggggaacctggccctgcgggtcag
gatggtgtcagtggtgacaagggtgaagacggagatcctggacaaccgggtcctcctggt
ccatctggtgaggctggcccaccaggtcctcctggaaaaagaggtccccctggagctgca
ggttcagagggaagacaaggcgaaaaaggtgctaagggagaagcaggcgctgaaggccct
cctggaaaaactgggccagtgggtcctcagggtcctgctgggaagcctggtccagaaggt
cttcggggcatccctggacctgtgggagaacaaggtcttcctggagcagcaggccaagac
ggaccacctggccctataggacctcctggcttacctggtctcaaaggtgatcctggctcc
aagggtgaaaagggacatcctggcttaataggcctgattggtcctccaggagagcaaggg
gaaaaaggtgacagagggcttcctggaacgcaaggatctccaggagcaaagggagatggg
ggaactccaggtcctgctggccccataggtccacctggtgctcctggcttaccaggacct
caaggcccaaagggtaataaaggctcttctggacctgctggtcaaaagggtgacagtggt
cctcctgggcctcctgggcctccaggtcctcctggcgaggtcattcagcctttacccatc
ctgtcacccaagaaaacgagaagacatgctgaaagcatacaagcagatgcaggtgataat
attcttgattattcagatggaatggaggaaatatttggttcgcttaattccctgaaacaa
gacattgagcatatgaaatttccaatgggtactcagacgaatccagccagaacttgcaaa
gacctgcaactcagccatcctgacttcccagatggtgaatattggattgatcctaaccaa
ggttgttcaggagattctttcaaagtttattgcaatttcacatctggtggtgagacttgc
atttatccagacaaaaaatctgagggagtaagtaccaatctgttttggtggcgaatgttt
acactttcatatgtagatgttgaaggaaattccattaacatggtacaaatgacattccta
aaacttttgaccgcttctgctcggcaaaatttcacctaccactgtcatcagtcagttgcc
tggtatgacatgtcgtcaggaaattatgacaaagcacttcggtttctgggatcaaatgat
gaggaaatgtcctatgataacaacccttacatcaaagcactgtatgacggctgtgcgtcc
agaaaaggttatgacaagactgtgattgaaatcaatacaccgaaaattgatcaagtacct
atcattgatgtaatgatcagtgactttggtgatcagaatcagaagtgtggatttgaagtt
ggtccagtttgttttcttggctaa
DBGET
integrated database retrieval system
