Cavia porcellus (domestic guinea pig): 100734763
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Entry
100734763 CDS
T07777
Symbol
Rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpoc03016
]
100734763 (Rtcb)
Enzymes [BR:
cpoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
100734763 (Rtcb)
Transfer RNA biogenesis [BR:
cpoc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100734763 (Rtcb)
Prokaryotic type
tRNA splicing ligases
100734763 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
100734763
NCBI-ProteinID:
XP_003462359
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKLNKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcaactacaatgatgagctccagttcctggagaagctcaacaagaactgctgg
cggataaagaagggcttcgtgcctaacatgcaggttgaaggcgttttctatgtgaacgat
gctctagagaaattaatgtttgaggaattgaggaatgcctgtcgagggggcggtgttggt
ggcttcttgccagccatgaagcagattggcaatgtggcagccctgcctggaattgttcat
cgatccattgggcttcctgatgtccactcaggctatgggtttgctattggaaatatggca
gcctttgatatgagtgacccggaagcagtggtgtccccaggtggtgtcggatttgacatc
aactgcggtgtccgcctgctgagaaccaatttagatgaaagtgatgttcagcctgtaaag
gaacagctagcccaagcgatgtttgaccacattcctgttggggtggggtccaaaggggtc
atcccgatgaatgccaaagacctggaggaggccttggagatgggtgtggactggtccctg
cgagaaggctacgcctgggcggaggacaaggagcactgtgaggagtacggaaggatgctg
caggccgaccccaacaaggtctctgcgagggccaagaagagaggccttcctcagctgggg
accctgggtgcaggcaaccactacgcagagatccaggtcgtggacgagatcttcaatgag
tatgctgccaagaagatgggcatcgaccacaaggggcaggtgtgcgtgatgatccacagc
ggcagccggggcctgggccaccaggtagccacagatgcgctggtggctatggagaaggcc
atgaagagagacaagatcatagtcaatgaccggcagttggcttgtgctcggattgcttcc
ccagagggccaggactacctaaaaggaatggcggccgctggcaactacgcctgggtcaac
cgctcgtccatgaccttcctaactcgccaggcttttgccaaggtcttcaacacgaccccg
gatgacctggacctgcatgtgatctacgatgtttcccacaacatcgccaaagtggagcag
cacgtggtggatgggaaggagcgcacactgctggtgcacaggaaggggtccacccgcgcc
tttcctcctcaccacccgctcattgctgtggactaccagctcaccggacagccagtgctc
attgggggcaccatgggaacctgcagttacgttctcactgggactgaacaaggcatgact
gagacctttggaaccacctgtcatggtgcgggccgagcgttgtcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttagacaaattggccgatatgggaattgcaatccga
gtggcctcgcccaaactagttatggaagaggctcccgagtcctataagaatgtgactgat
gtggtgaatacctgccatgacgccggaatcagcaagaaggccattaaactgcggccaatc
gccgtcatcaaagggtag
DBGET
integrated database retrieval system
