Cavia porcellus (domestic guinea pig): 100734921
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Entry
100734921 CDS
T07777
Symbol
Upf2
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03013
Nucleocytoplasmic transport
cpoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100734921 (Upf2)
03015 mRNA surveillance pathway
100734921 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100734921 (Upf2)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100734921 (Upf2)
mRNA cycle factors
P-body specific factors
100734921 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100734921
NCBI-ProteinID:
XP_013011733
Ensembl:
ENSCPOG00000008809
LinkDB
All DBs
Position
Unknown
AA seq
1526 aa
AA seq
DB search
MPEGTAGGILVCFRSGSCTDSFFLSSSLRPAPTRIPAALVSGGRRAGGRREEGEEEGRRA
LSCEIGRGRGGESRSAGVGAGKPGANVDNRLEEAGSGGTGLDPYSLRDPKGDSAPQFSGG
GERRRTTVRRRSLQTLTEKRSPTRESPAPQGQTWGAAEVPVPSAGPGLGAGFGESAVAGG
RCLGTWSRARGGWGSPSGVGREARGGSGEARVWEAVEWGDEPERPRWRGSVRREAGAGTR
IAREGDWMLRGSKSCGGEASERKKSASMEEKESLLNNKEKDCSEKRPVSSKEKPKDDLKI
TAKKEVSKVPEDKKKKLEEDKRKKEDKERKKKEEEKVKAEEELKKKEEEKKKHEEEERKK
QEEQAKRQQEEEAAQLKEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLD
SSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHL
CSLFHQRYADFAPSLLQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLS
LIYEQLKNIINADRESHTHVSVVISFCRHCGDDIAGLIPRRVKSAAEKFNLSFPPSEIIS
PEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMS
YQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGDYDLEGGIWEDEDAR
NFYENLIDLKAFVPAILFKDNEKSYQNKESNKDDSKEAKESKDNKEASNPDDLDLELENL
EINDDTLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLID
KAAMDFCMNMNTKANRKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLR
GDFRFHVRKKDQINMKQKNKTVVLXELLSXKMLQKNDTLHCLQMLLSDFSHHHIEMACTL
LETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKK
KRPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHC
VANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVES
AVIFRTLYSFTSFGVNPDGTPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFL
VYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLDESIRQVHELERE
YLIKLGLVNDKESKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDD
DGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQ
QRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKIL
NVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNR
ERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atgccggaggggacggctgggggaattctcgtctgttttcgatctggcagttgcacggac
agcttcttcctttcttcgtctcttcgccccgcccccacacgcatcccggccgcgctggtg
agtggcgggcggagggccggcgggcggagggaggagggggaagaggagggaaggcgggcc
ctcagctgcgagataggtagggggaggggaggggagagccggagcgctggagttggtgct
gggaaacccggggctaatgttgacaacaggctcgaggaagcggggtcggggggcaccggc
ctggacccttactccctgagggacccaaaaggcgactccgcaccccagttctctgggggc
ggcgagcggcggaggaccacggtccggcgtcgttctcttcagaccctcactgagaagcgc
tccccgacgcgggagtccccggccccgcaggggcagacatggggggcagcggaggtgccc
gtcccgtctgctgggccgggccttggggctggattcggggagtctgctgtggctggggga
aggtgtttggggacgtggagtagggcgaggggaggttggggaagcccttcgggagtcggg
agggaagcgaggggaggaagcggagaggcgcgtgtgtgggaggcggtggagtggggagat
gagccggagcgtccgcggtggagagggagtgtgaggcgagaagctggggctgggacgagg
atagcccgcgaaggtgactggatgctccgagggagcaagagttgtggcggggaagcgtct
gagcgtaaaaagtcagcaagtatggaagaaaaagaatctttgctaaacaacaaggagaaa
gactgcagtgaaaagcggccagtgagcagcaaggaaaagccaaaagacgatctcaaaatc
actgccaagaaagaggtcagtaaggtccctgaagacaaaaagaagaaactggaagaagat
aagaggaaaaaggaagacaaggaacgcaaaaaaaaagaagaagaaaaggtaaaggcagag
gaagaattaaagaaaaaagaagaagaaaaaaagaagcatgaagaggaagagagaaaaaag
caagaagagcaggcaaaacgtcagcaagaagaagaagctgctcagttgaaagaaaaggaa
gaatctcttcagcttcatcaggaagcttgggaaagacatcagttaagaaaggaacttcgt
agcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttctttagtcgcttggac
tccagtttgaagaaaaatactgcttttgtcaagaaactaaaaactattacagaacaacag
agagactccttgtctcatgattttaatggcctaaatttaagcaaatacattgcagaggct
gtagcttccattgtggaagccaaactaaaaatctctgatgtgaactgtgctgtgcaccta
tgttctctctttcaccagcgctatgctgactttgccccctcacttcttcaggtctggaaa
aaacattttgaagcaaggaaagaagaaaaaactcctaacattaccaagctaagaactgat
ttgcgtttcattgcagaattgacaatagttgggattttcactgacaaggaaggtctttcc
ttaatctatgaacagcttaaaaatattattaatgctgatcgagaatcccacactcatgtt
tctgtggtgattagtttctgtcgccattgtggagatgatatcgctggacttatacctagg
agagtaaagagtgctgctgagaagtttaatttgagttttcctcctagtgagataattagt
ccagagaaacaacaacctttccagaatcttttgaaagagtactttacgtctttgaccaaa
cacctgaaaagggaccacagggagctccagaatactgagagacaaaacaggcgtattcta
cattctaaaggggaactaagtgaagatagacataaacaatatgaagaatttgctatgtct
tatcagaagctgctggcaaattctcaatccttggcagaccttttggatgaaaatatgcca
gatcttcctcaggataagccaacaccggaagagcatgggcctggaatcgatatattcaca
cctggtaaacctggagattatgacttggaaggtggtatatgggaagatgaagatgctcgg
aatttttatgaaaatcttattgatttgaaagctttcgttccagctatcttgtttaaagac
aatgaaaaaagttatcagaacaaagagtctaacaaagatgattccaaagaagcaaaggaa
tctaaggataataaagaggcttcaaatcctgatgatctggaccttgagttggaaaatcta
gaaattaatgatgataccttggagttagaaggtggagatgaagctgaagatcttacaaag
aaacttcttgatgaacaagaacaagaggatgaagaagccagcactggatcccatctcaag
ctcatagtagatgccttcctccagcagttgccaaactgtgtcaaccgagatctgatagac
aaggcagcaatggatttttgcatgaacatgaacacaaaagcaaacaggaagaagttggta
cgagcactcttcatagttcctagacaaaggttggatttgctaccattttatgcaagattg
gttgctacgttgcatccctgcatgtctgatgtagcagaggatctttgttctatgctgaga
ggggatttcagatttcatgtacgaaaaaaggaccagatcaatatgaaacaaaagaacaaa
actgtcgttttatgagaactactaagtnntaaaatgttacaaaaaaatgatacgctacat
tgtttgcagatgcttttatcagacttctctcatcatcatatcgaaatggcatgtactcta
ctagagacatgtggacggtttctttttagatctccagaatcacacctgaggacaagtgta
cttttggagcaaatgatgagaaagaaacaagcaatgcatcttgatgcaagatatgtcaca
atggtagaaaatgcttattactattgcaacccacctccagctgaaaagacagtgaaaaag
aaacgtcctcccctgcaggaatatgtccggaaacttttgtataaggatctttctaaggtc
actactgaaaaggttttgagacagatgcgaaagttgccttggcaggaccaagaagtgaaa
gactatgttatttgttgtatgataaacatctggaacgtgaaatacaatagtattcactgt
gtagccaatcttttagcaggactagtgctctaccaagaggatgttgggatccatgttgta
gatggagttttagaagatattcgattgggaatggaggttaatcaacctaaatttaatcag
aggcgtatcagcagtgctaagttcttaggggaactttataattatcgaatggtggaatcg
gctgttattttcagaactctctattcttttacttcattcggtgttaaccctgatggcact
ccaagttcactggaccctcctgagcatcttttcagaattagactagtatgcactattttg
gatacctgtggccagtactttgacagaggttccagtaaacgaaaacttgattgcttcctt
gtatattttcagcgttatgtttggtggaagaaaagtttggaagtttggacaaaagatcat
ccatttcctattgatatagattacatgatcagtgatacactagaactgctaagaccaaag
atcaaactgtgtaattctctggatgaatccatcagacaggtacatgaattggaacgagaa
tacttaataaaactaggcctagtaaatgacaaagagtcaaaagattctatgacagaagga
gaaaatcttgaagaagatgaagaagaagaagaagggggagctgagacagaggagcaatct
ggaaacgaaagtgaagtaaatgagccagaggaagaggagggttctgataatgatgatgat
gatggagaagaggaggaagaggagaatacagattaccttacagattccaataaagagaac
gaaactgatgaagaaaatactgaggtaatgattaaaggaggtggactaaagcacgtacct
tgtgtagaagatgaggacttcattcaagctctggataaaatgatgctagaaaatcttcag
caacgaagtggtgaatctgttaaagtgcatcagcttgatgttgctattcctttgcatctc
aaaagtcagctgaggaaaggacctcctcttggaggtggggaaggagaggcagagtctgca
gacacgatgccatttgtcatgctgacaagaaaaggaaataaacagcagtttaagatcctc
aatgtgcccatgtcgtcccaacttgctgcaaatcattggaaccagcaacaagcagaacag
gaagagaggatgagaatgaaaaagctcacactagatatcaatgaacggcaggaacaagaa
gattatcaagaaatgctgcagtctcttgcccagcgcccagctccagcaaacaccaatcgt
gagcggcggcctcgttaccaacatccaaagggagcacctaatgcagatctaatctttaag
actggtggcaggagacgttga
DBGET
integrated database retrieval system
