Cavia porcellus (domestic guinea pig): 100735315
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Entry
100735315 CDS
T07777
Symbol
Chd9
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpoc03036
]
100735315 (Chd9)
Chromosome and associated proteins [BR:
cpoc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100735315 (Chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
HDA2-3
HTH_Hrp3
ResIII
Motif
Other DBs
NCBI-GeneID:
100735315
NCBI-ProteinID:
XP_012996825
Ensembl:
ENSCPOG00000036544
LinkDB
All DBs
Position
Unknown
AA seq
2892 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKMTDFEQLNQFDSMKFHQVNQSFGSPAEHVLSPHSQFNCSPIHHPQNQPNGLFPDVA
DGSPMWGHQTATNISNQNGSPFHQGHSHSMHQSKSFVAHHDFALFQANEQQTQCTSLRSQ
QNRNNLNTGQNSLCQSKNFMDVNVSGPHRVSVNHPPQITNASTSQQSLSMQFSQTSNPSV
HFLKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHISPNSLQPSAVLTPNHTNQ
TLSDFTGGTSFSPHRGIKQESTQHILNPSTSLNSNNFQMLHSSQPQGNYSNSKLSPVHMN
FPDPVDSGTQMGHFNDHVETNGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQFDE
STFGQDNSNHVLDHDLDRHFTSHLVARPSDMAQTQLQCQARNWHSSFSNHQHLHDRNRLC
LQRQPPSSKKSDGSGTYTKLQNTQVRVMSEKKQRKKVETESKQEKANRIISEAIAKAKER
GERNIPRVMSPENFPSASVEGKEEKKGRRIKSKPKDKDSKKTKTCSKLKEKTKIGKLIIT
LGKKQKRKNDSSDEISDAEQMPQHAFKDQDSQKRRSNRQIKRKKYTEDGEGKQSEEEVKG
SMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRIVKKEITPGVMIDTEEFFVKY
KNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYTEVDRVLE
VSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLERP
PSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGXGKTIQSITFLY
EILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQG
RIIRGAYRVQAIITTFEMIXAAEKSTHXMRCVIMMKHIVKKXNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFRDTYSPTASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLK
LGLDKAVLQSMSGRESTVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQIL
LRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGKNSL
VIDTPRIRKQTRPFSATKDELAELSEAESEGEEKPKLRRPCDRTSGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNERDVEVICRALLAYCLVHYRGDEKIKGFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYMDGDVEDPEYKPAPAI
FKDDIEDDVSSPGDLVIADGDGQLMEGDKIYWPTQSALTTRLRRLITAYQRTNKNRQVQQ
IQPTFSVPASIIQPLYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPDRGQ
FDWTKFRAMARLHKKTDDSLEKYLYSFMSMCRRVCRLPSKEELVDPSIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPIWWECGPHDRDLLIGAAKHGVSRTD
YHILRDPELSFMAAQRNYSQNKMAHSRTSTPLLQQYQVALSTSPLTSLPRLLDAKGIILE
DMKVKSENLKEEPQSSEEESMSSVEARTLIKSEPVSPKNGVLSQATGDQKSGGKVETDRR
MVAARTKPLTPNSASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSEESDSDEEEVQKREGTPHVKAYDEESIASL
STTQDETQDSFQINNGTPESAYVLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSA
RRSYDANTVASFYTTKLLDSPGVSTEYSEPSVPTPPGAGVKEEHDQSTQMSKVKKHVREK
EFTVKIKDEGGLKLTFQKQGLSQKRPFDSDDGALGQQQYLTRLRELQSASETSLANFPKS
MPMSGTSIQSTSGANGVILDNQPIVKKRRGRRKNVEGVDILFFNRNKPPNHVSKIYWSLS
LNFNPSKYTXPQRIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVEDLGAF
IPRMQLHEGRPKQKRHRCRNPNKLDINSLTGEERVQLINRRNARKVGGAFAPPLKDLCRF
LKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPIVREEVSRRGRRPKSGIAKTTAAVA
AATATNVSGNPLLTNGLVPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPASLSSGREAKN
MAAMFPMLLSGMTGLPNLLGMGGLLTKPAESGAEEKKGNDSKELEGKTERTESQSSENGT
ENSVSSSPSTSSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPTLSQSNTFD
VQKNKNNDLGSSKSAEVKEEDSRVRDQEDKGVTEPSPLNENSTDEGSEKADASSGSDSTS
SSSEDSDSSNED
NT seq
8679 nt
NT seq
+upstream
nt +downstream
nt
atgacagatccaatgatggacttttttgatgatgccaatctttttggtgagaccttggaa
ggtttgtcagatgatgcatttgtacaacctggacctgtttcactagttgatgagttgaac
ttgggtgcagagtttgaacctttgcacatagactcactgaatcatgttcaaggtactcca
acacatcagaagatgactgattttgaacaactaaatcagtttgattcaatgaagtttcac
caagttaatcaatcttttggtagcccagctgaacatgtattatcgccacattctcagttt
aattgttctccaattcatcacccccaaaaccaacccaatggtttgtttccagatgtagca
gatggcagcccaatgtggggccatcagacagctactaatatttctaatcaaaatggatcc
ccttttcatcaaggacattcacactctatgcatcaaagtaaaagctttgttgcacaccat
gactttgccttatttcaggccaatgaacaacaaacacagtgtacttcactacgttcccag
caaaaccggaataatcttaacacaggccaaaattctctatgccagtctaaaaattttatg
gatgttaatgtttctggtccacatagagtcagtgttaaccacccaccacaaattactaat
gcatctacttcacaacagtccctttcaatgcaattttctcaaacgtcaaatccttcagta
cactttctgaagtgtagcagtcatcaagaaggaaattttaatggaccttctccaaatatg
acttcttgttctgtcagtaattcacagcagttttcttcacattattccttttccagtaat
catatatcaccaaacagtctccagccctctgctgttcttacacccaatcatacaaatcag
actttatctgattttactggaggtacttccttttcacctcatagaggaatcaaacaagag
tctactcagcatatcctgaaccccagtacatcattgaattcaaataatttccaaatgttg
cattcgtcacagcctcagggtaattatagcaattcaaaattatctcctgtgcacatgaac
ttcccagatcctgttgactcaggaactcaaatgggccacttcaatgatcatgtagaaact
aatggcttttcatctttggaagagaatttacttcatcaagtggaatcacaaactgagccc
ttcacaggacttgatccagaggacctccttcaagaagggctccttccgcaatttgatgag
tcaacatttggacaagataattcaaatcatgttttagatcatgatcttgatcgacacttt
acttcacatcttgtagcacggccttctgatatggctcaaactcagttgcaatgtcaggct
cggaactggcattcatcattttctaatcatcagcatttacatgacagaaatcgactatgt
ttacagagacagcctccatcttccaagaagagtgatggttccgggacatacactaagttg
cagaatacccaggtgagagtcatgtctgagaagaagcagagaaaaaaggtggaaacagaa
agcaagcaagaaaaggctaatcgtataatatcagaggctatagcaaaagcaaaggagcgt
ggggagcgcaatattcctcgagtaatgagccctgaaaactttcctagtgcttcagttgaa
ggcaaagaggaaaagaaaggtcgaaggataaaatcaaagccaaaggacaaagacagcaaa
aaaacaaaaacttgttctaaattaaaagagaagacaaaaattggcaaactcattataaca
ttgggtaagaaacaaaaaagaaagaatgattcttcagatgaaatatctgatgccgagcag
atgccacagcatgcattcaaagatcaagattctcaaaaaagaagatcaaatcgacaaatt
aaacgaaaaaaatacacagaagatggagaagggaaacaatctgaagaagaggttaaaggc
tcaatgaaaataaaaaagaattcagctcctttacctggtgaacagcctttgcaattattt
gtggagaatccgagtgaagaagatgctgcaattgtagacaaaatactatcttctagaatt
gtgaaaaaggaaataacacctggagtgatgattgatacagaagaattttttgtgaaatac
aagaattactcttatcttcattgtgagtgggccacagaacagcagcttttgaaagataaa
aggatccagcagaaaatcaaacgattcaaattgagacaagcacaaagagcacattttttt
gcagatatggaagaagaaccatttaacccagactacactgaagtagacagagttttagaa
gtttctttttgtgaagataaggacactggggagcctgttatttactacttagtaaagtgg
tgctcgttgccatatgaagatagtacatgggaactaaaagaagatgtagaccttgcaaaa
atagaagaatttgaacaactgcaagcttcaaggcctgacacaagacatttagaacgtcct
ccttctaatatatggaagaaaattgatcaatccagggactataaaaatggcaatcaactc
agggaatatcaactggaaggactcaactggctcctattcaattggtacaacagacgaaac
tgcattttagcagatgaaatgggtnctgggaaaaccattcaatcaattacattcctctac
gaaatccttctgactggtataagaggacctttcctgattattgcaccactttctaccatt
gcaaactgggagagagaatttcgtacgtggactgatattaatgttgtggtttatcatggg
agcctgatcagcagacagatgatacagcaatatgagatgtacttcagggattcacagggg
cgcatcattcgaggagcttacagagtccaagctatcatcactacttttgaaatgatctga
gctgcggagaaatccacgcattgaatgcgatgtgtgattatgatgaagcacatagttaaa
aaataaaattgtaagcttctagaaggtctgaaactcatgaatttggaacacaaggtgctt
ttgactggaactcctctccaaaatacagttgaagaactcttcagtcttctgcactttctc
gaaccattaaggtttccttctgagtcaacatttatgcaagaatttggagatctgaaaaca
gaggaacaggtgcagaaacttcaagctattctgaaaccgatgatgttgaggagattaaaa
gaagatgtagaaaaaaaattggcacctaaggaagaaactatcattgaagtagagcttact
aacattcaaaagaaatactacagggctattttggagaaaaatttttcatttttatccaag
ggtgcaggacaaactaatgtacctaatttggtaaataccatgatggagctcaggaaatgc
tgtaatcatccatatcttatcaaaggtgctgaggagaaaatacttggggaatttagggat
acttatagtcctactgcttctgattttcatcttcaagcaatgatccagtctgctggaaag
ttggtccttattgataaattgcttcccaagatgaaagcagggggtcacaaagtactcatc
ttctctcagatggttcgctgtcttgacattttggaagactatctcatacataaaagatat
ttgtatgagcgaattgatgggagagtcagagggaatcttcgacaggctgctatagatcga
tttagtaaacctgattcagatcgatttgtttttctcctgtgtacacgagctggtggcttg
ggcatcaacttaactgcagctgatacatgtataatttttgattctgattggaatcctcaa
aatgaccttcaggcccaggctcgttgccacagaattggtcagaacaaagcagttaaagtc
tacagattagtaactcgtaactcatatgagagagagatgttcgatcgagccagtctgaaa
ctgggcctggataaagctgtgttacagagcatgagtgggcgagaaagtactgttggtggt
attcaacaactttctaaaaaggaaatagaagacttgcttcgaagaggggcttatggtgcc
attatggaagaagaagatgaaggctctaaattctgtgaagaagatattgatcagatttta
ctacgtcgtacaaaaactattacaattgaatcagaaggacgtgggtcaacatttgccaag
gcaagttttgtggcctctggaaaccggacagatatttccttagatgatcctaacttctgg
caaaaatgggctaaaaaggcagaaattgatatagatgccatcagtggcaaaaacagcttg
gttattgacactccaagaattaggaagcaaacaagaccttttagtgccacaaaagatgaa
ttggctgaattatctgaagctgaaagtgaaggagaagaaaaacccaaacttcggagaccc
tgtgaccgtaccagtggctatggaagaactgaatgcttcagagtagagaaaaacctccta
gtttatggatggggtcgatggagagagattctatcgcatggacggtttaaaagacagcta
aatgagcgtgatgtagaagtaatttgccgagctctcttagcatattgccttgttcattac
cgaggagatgagaaaattaaaggtttcatatgggatctcatcactccaactgaagatggg
cagacacgagagctacaaaatcatctaggtctgtcagctcccgtacccaggggtcgaaaa
ggaaagaaagtaaagactcaaacaagctcgtttgatatacaaaaagcagaatggcttcga
aaatataaccctgagcaactacttcaagatgaaggctacaaaaaacatattaaacaccat
tgtaataaagttttacttcgtgtaagaatgttgtattatctaaagcaagaagttattgga
aatgagtgtcagaaagtatttgatggagttgatgcaagtgacattgatgtttgggtacca
gaaccagaccattccgaagttcctgctgagtggtgggactttgatgctgataagtcactt
ctaattggagtttttaaacatgggtacgaaaaatacaacactattcgagcagatccggca
ttatgcttcttagaaagagtggggaaacctgatgacaaagcagttgctgctgaacagaga
gcaaatgattacatggatggggatgtggaagacccagagtacaaacctgccccagccatc
tttaaagatgatatagaggatgatgtttcctctccaggagatcttgttatagcagatgga
gatggtcagttgatggagggtgataaaatttattggcctactcagtcagcattaaccacc
cgattaaggcgtctcattactgcctatcagcgtactaataaaaacagacaagtccagcag
atacaaccaacattctctgtgcctgccagtataattcagcctctttatgaagaagccacc
cttaatcctaaaatggcagccaagatagaaagacaacagagatggacaagaagagaagaa
gctgacttttatagagtcgtatctacatttggagtcgtttttgaccctgacagaggccaa
tttgattggacaaaatttagagctatggccaggctacataagaaaactgatgatagtttg
gagaaatatttatactcatttatgtccatgtgtcggagagtttgtcgtcttccttccaaa
gaagaattggtggatccaagtatttttattcaaccaattacagaagaacgggcttctagg
actttgtatcgcattgaacttctaaggaaagtacgggagcaggcccttcgacatccacag
ttgtttgaacgtttgaagctttgccatccaaatccagatttaccaatctggtgggaatgt
ggtccccatgatagggatttgctcattggcgctgctaaacatggggtgagccgaacagac
tatcacattcttcgtgatcctgaactctcatttatggcagctcaaaggaactatagtcaa
aataaaatggctcattcccggacttctaccccacttttacagcaatatcaagtagcactt
tctacatctcctcttacctctttacctagactcctagatgctaaaggtattattctagag
gatatgaaagttaaaagtgaaaatcttaaagaagagcctcagtcttctgaagaagaatct
atgtcttctgtggaagccaggacactaataaagtctgagcctgtaagtccaaagaatggt
gttttatcacaggctactggagaccagaaatctggtggaaaagttgaaacagacagacgc
atggttgcagccagaacaaaacccctaactccaaactcagcttctaagaaacagagagtc
cacaaaagaggatcagaatctagttctgattctgactctgattctgagagatcatcttgt
tcttccagatcatcttcttcctcgtcttcctcctcttcttgttctcactctcgatcaggc
tctagttcttcttcatcttcatcttgttcttcagcgtcatcttcatcttcctcttcctcc
tcctcatcatcatcctcttcatcttcatcagaagaaagtgacagtgatgaagaggaagtc
caaaagcgagaaggtacccctcatgtgaaagcctatgatgaagaaagcattgcatcactg
agcaccacccaggatgagacccaggacagttttcaaataaacaatgggacaccagagtct
gcttatgtgttacaaggtggatatatgctggcagcctcctattggccaaaggatcgggtg
atgatcaaccgcctggacagtatttgtcaaacagttctgaaagggaagtggccttcagcc
agaagaagttatgatgctaatacagtggcttctttctataccacaaaactactggacagc
cctggagtctctacagaatacagtgagcccagtgttcccacgcctccaggtgctggtgtc
aaagaagaacatgatcagtcaacacagatgtcaaaggtgaagaagcatgtacgagaaaag
gagtttacagtgaaaatcaaagacgaaggtggtttaaagttgacatttcagaagcaaggg
ctttcccagaaaagaccgtttgatagtgatgatggtgctctgggacagcagcagtacctt
actcgacttcgagagcttcagagtgcatcagagacaagccttgctaattttccaaaatct
atgccaatgtcaggtacttccatccagtcaacctctggtgccaatggagtcattttagac
aaccagcccatagtcaaaaaaagacggggaaggagaaagaatgtcgagggtgtagacatc
ctcttttttaatagaaataaaccacctaatcatgtaagtaaaatttattggtctttgagt
ctaaactttaatcctagtaaatatacnnaacctcaacgaattcctgatacagaaagtcca
gttccagtgattaatcttaaagatgggacaagacttgcaggagatgacgcaccgaagcga
aaggatttggaaaaatggcttaaggaacacccaggttatgtggaagatttaggagctttt
attcctagaatgcagcttcacgagggaaggcccaaacaaaaaaggcatcgttgcagaaac
cccaataaacttgatattaatagtctcactggagaagaacgtgttcagctgattaacagg
agaaatgccagaaaggttggaggtgcatttgctccacctttgaaagatttatgtagattc
ctaaaagaaaattcggaatatggagtagctcctgaatggggagatgttgttaagcaatct
gggtttcttccagaaagtatgtatgaacgtattctcactggtccgattgtgagagaggaa
gtaagcaggcgagggagacgccctaagagtggaattgcgaagaccacagcagcagtagct
gctgcaactgccaccaatgtttcaggcaatcctttactaaccaacggattagttccaggt
gtggatctcacaactcttcaggccttacaacaaaatctacaaaacttgcagtcactgcaa
gtaactgctgggctgatgggaatgcctgccagcctttcttctggaagagaagcgaaaaac
atggctgctatgttccccatgctattgtcaggaatgactggattaccaaatctgttgggc
atgggaggactcctgacaaagcctgcagaatctggggcagaagaaaaaaagggaaatgac
tccaaggagctagaaggaaaaacagaaaggacagagagccaaagttcagagaatggtaca
gaaaactctgtttcaagttctccttcaacttcctctactgctgcattaaatacagctgca
gctgctaacccattagctcttaacccactgttactgtctaatatactttatccagggatg
cttctcactccaggccttaatcttcatattccaactttgtcccagtccaatacttttgat
gtacagaaaaacaaaaacaatgacttgggctcttctaagtctgcagaagtaaaggaagaa
gattccagagttagagatcaggaagacaaaggagtcactgaacccagtccactcaatgaa
aacagcacagatgagggttcagagaaagccgatgcttcatctggatctgatagtacatca
tcgtcatctgaggattcagattctagtaatgaagactga
DBGET
integrated database retrieval system
