Curtobacterium poinsettiae: OE229_06750
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Entry
OE229_06750 CDS
T10347
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpoi Curtobacterium poinsettiae
Pathway
cpoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OE229_06750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpoi03400
]
OE229_06750 (mfd)
Enzymes [BR:
cpoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OE229_06750 (mfd)
DNA repair and recombination proteins [BR:
cpoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OE229_06750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UYC82157
UniProt:
A0A9Q9PB41
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All DBs
Position
1365279..1368887
Genome browser
AA seq
1202 aa
AA seq
DB search
MTISGIIPALSRASAFDRVLRAAPRDADFSVVDGLRVPLLGALLAERNGPQCVLVITATG
REAEAVREAFGSYVPDADVLEFPAWETLPHERLSPSAQTVGTRIATLRKLAAWQAADPAE
RRQTIVVASVRAALQPIASNLTSLAPVVLRTDSRGNDLAAIASQLVDLAYSRVDLVTRRG
EFAVRGGILDVFPPTADHPARVDFFGDEIEAIKAFSVADQRTTEDDLGSVELTASRELLL
SDDVRQRAREMLHEFPNLSQMLAKIAEGIPVEGMESLAPALVQDLVPMTSYLPDEATIAV
FSPERVNGRANSLAETNTEFLQAAWSAAVAGAQAPIDLDAGNFLTVQQLKNTRGQRTWWT
VSPFDSGLDEGDTERVLTDAEAAAEAGEYIRVRAEAVPSFAGSADGAIAHVKSLTDDGWA
VVVTAQGQGLVERAVQVLADAGVAARADAVTAPPEPGVAVVTTASVEHGFAIPDPRIVVL
SEAEFYGRSVQQGARTVKKLASRRKNVVDPLQLKPGDVVVHATHGIGKFVELVSREVSSG
GRNAVKTQREYLVLEYAPSKRNYPGDKLFVPTDQLDQLSRYVGGESPTLSKMGGSDWSAA
KSKARKAVRDIAVDLVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETADQLTTIDEIK
RDMERPIPMDRLLSGDVGYGKTEVAIRAAFKAVQDGKQVVMLVPTTLLVRQHMETFQERF
AGFPVHLRALSRFQTEKESKETIAGLADGTVDIVIATHRILSQGITFKDVGLVIIDEEQR
FGVEHKDQLKKFKTNVDVLAMSATPIPRSLEMAVTGIREMSTLATPPEDRHPILTFVGPQ
SDLQVAAAIRRELLREGQVFYVHNRVKDIQSVAAHLAEIVPDARIAVAHGQMSESTLEQV
MVDFWERRFDVLVSTTIIETGLDIANANTLIIDKADKYGLSQLHQLRGRVGRGRERGYAY
FLYDSEKPLSETAQDRLETIAANNELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFD
LYLRMIGEAVSQFRGDVAEGQTELRLEIPVDAHIPEDYVESERLRLEAYQKLSAASAPTA
QPNAIDMVLDELTDRYGQPPQAVQTLVEVSRLRRMAQQVGLSDVVVMGSNLRVAGKELAD
SSQVRLKRMFPGARWFPQQNATSIPMPRPHDQALPDDALIRWVESILTAVYGATTPAEAP
AA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatctcgggcatcatccctgcgctctcgcgcgcctccgccttcgatcgcgtgctg
cgcgccgcaccgcgcgacgccgacttctccgtcgtggacggcctgcgcgtgccgctgctc
ggcgcgctgctcgccgaacgcaacggtccgcagtgcgtcctcgtgatcacggcgaccggg
cgtgaagccgaggcggtccgagaagcgttcggcagctacgtccccgacgccgacgtgctc
gagttcccggcgtgggagaccctgccgcacgaacgcctcagcccgagtgcccagaccgtc
ggcacgcgcatcgcgacgctccggaagctcgcggcgtggcaggcggcggacccggccgag
cgtcgccagaccatcgtcgtcgcgagcgtccgcgccgcgctgcagccgatcgcgagcaac
ctgacgtccctggcgccggtggtgctgcggaccgactcgcggggcaacgatctggcggcg
atcgcgtcccagctggtggacctcgcctactcgcgcgtcgacctcgtcacccgccgtggt
gagttcgcggtgcgcggtggcatcctcgacgtcttcccgccgacggccgaccacccggca
cgcgtcgacttcttcggcgacgagatcgaggcgatcaaggcgttctccgtcgccgaccag
cgcaccacagaggacgacctcggctcggtcgagctgacggcctcgcgcgaactcctgctc
agcgacgacgtccggcagcgggcgcgcgagatgctgcacgagttcccgaacctgtcccag
atgctcgcgaagatcgccgagggcatcccggtcgagggcatggagtccctcgcaccggcg
ctcgtgcaggacctcgtgccgatgacctcctacctgccggacgaggccaccatcgcggtg
ttctcgcccgagcgggtgaacggccgcgcgaacagcctggccgagacgaacaccgagttc
ctgcaggcggcctggagcgccgcggtcgccggtgcccaggccccgatcgacctcgacgcg
ggcaacttcctgaccgtgcagcagctcaagaacacccgcggccagcgcacctggtggaca
gtgtcgccgttcgactccggcctcgacgaaggggacacggagcgcgtcctcaccgacgcc
gaggccgccgccgaggccggcgagtacatccgcgtccgggccgaggccgtcccgagcttc
gccggcagtgccgacggggcgatcgcgcacgtcaagtcgctgacggacgacgggtgggcg
gtcgtcgtgaccgcgcagggccagggcctcgtcgagcgtgcggtgcaggtcctcgccgac
gccggggtcgccgcacgtgccgacgccgtgaccgcgccgcccgagcccggcgtcgccgtc
gtgacgacggcgagcgtcgagcacggcttcgcgatccccgacccccgcatcgtggtgctg
agcgaggccgagttctacggccgcagcgtccagcagggcgcccgcaccgtcaagaagctc
gcgagccggcgcaagaacgtcgtcgacccgctgcagctcaagccgggggacgtcgtcgtg
cacgcgacccacggcatcggcaagttcgtcgagctcgtcagccgcgaggtctccagcggc
ggccgcaacgccgtgaagacgcagcgcgagtacctcgtgctcgaatacgcgccgtcgaag
cgcaactacccgggcgacaagctcttcgtgccgaccgaccagctcgaccagctgtcacgg
tacgtcggcggcgagtccccgaccctgtcgaagatgggcggctcggactggtccgccgcc
aagtcgaaggcgcgcaaggccgtccgcgacatcgccgtcgacctggtcaagctgtactcg
gcgcgcatggcgtcgaaggggcacgcgttcggtccggacaccccgtggcagcgcgagctg
gaagaggcgttcccgttcgccgagaccgccgaccagctcaccacgatcgacgagatcaaa
cgcgacatggaacgcccgatcccgatggaccgcctgctctccggcgacgtcggctacggc
aagaccgaggtcgcgatccgtgccgcgttcaaggccgtgcaggacggcaagcaggtcgtc
atgctcgtcccgacgaccctgctcgtccgccagcacatggagacgttccaggagcgcttc
gccgggttccccgtgcacctgcgcgccctcagccggttccagaccgagaaggagtcgaag
gagaccatcgccgggctcgccgacggcacggtcgacatcgtcatcgcgacccaccggatc
ctctcgcagggcatcacgttcaaggacgtcgggctggtcatcatcgacgaggaacagcgg
ttcggcgtcgagcacaaggaccagctcaagaagttcaagacgaacgtcgacgtcctggcg
atgtcggcgaccccgatcccgcgctcgctcgagatggcggtcacgggcatccgcgagatg
tcgaccctcgccaccccgcccgaggaccgccaccccatcctgaccttcgtcgggccgcag
tcggacctgcaggtggcggcggcgatccgccgcgagctgctgcgcgaggggcaggtgttc
tacgtccacaaccgcgtgaaggacatccagtcggtcgccgcgcacctggccgagatcgtg
ccggacgcccgcatcgccgtggcgcacgggcagatgtcggagagcaccctcgagcaggtc
atggtcgacttctgggagcgccgcttcgacgtcctggtctcgacgacgatcatcgagacg
ggcctcgacatcgccaacgcgaacacgctcatcatcgacaaggcggacaagtacggtctg
tcccagctgcaccagctgcgcggtcgggtcggccgcgggcgggagcgcgggtacgcgtac
ttcctctacgactccgagaagccgctgtccgagaccgcgcaggaccgcctcgagaccatc
gccgcgaacaacgagctcggcgcgggcatgcaggtcgccatgaaggacctcgagatccgc
ggggccggaaacctgctcggcggggagcagtccggccacatcgccggcgtcggcttcgac
ctgtacctgcggatgatcggcgaggcggtgtcgcagttccgtggcgacgtcgccgagggg
cagaccgagctccggctcgagatccccgtcgacgcgcacatccccgaggactacgtcgag
tccgagcgactccggctcgaggcgtaccagaagctctcggccgcctcggccccgacggcg
caaccgaacgcgatcgacatggtcctcgacgagctcaccgaccgctacggacagccgccg
caggccgtgcagaccctggtcgaggtctcccgcctccgtcgcatggcgcagcaggtcggc
ctgtccgacgtcgtggtgatgggctcgaacctgcgggtcgccggcaaggaactcgccgac
tcgtcgcaggtgcggctgaagcgcatgttcccgggggcgcgctggttcccgcagcagaac
gcgacgagcatcccgatgccgcgtccgcacgaccaggcgctgccggacgacgccctcatc
cggtgggtggagagcatcctcaccgccgtgtacggggcgacgaccccggccgaggcgccg
gccgcgtag
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integrated database retrieval system
