Chitinophaga pollutisoli: WJU16_02060
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Entry
WJU16_02060 CDS
T10245
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJU16_02060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpol03019
]
WJU16_02060
03009 Ribosome biogenesis [BR:
cpol03009
]
WJU16_02060
Enzymes [BR:
cpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WJU16_02060
Messenger RNA biogenesis [BR:
cpol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJU16_02060
Ribosome biogenesis [BR:
cpol03009
]
Prokaryotic type
rRNA helicases
WJU16_02060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
WZN41820
LinkDB
All DBs
Position
complement(499684..501450)
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AA seq
588 aa
AA seq
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MTTFESLGLQENLLKAVTDLGFVSPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLP
LLHQLDTKVRNVQGLILCPTRELCLQITNDLKNFSKYLGDVNIVAVYGGTSIGMQLRDLK
RGAHIVVATPGRLLDIIERGAINFDNVRYAVLDEADEMLNMGFQEDINSILSNTPEEKTT
WLFSATMPTEVRRIAQKYMEDPFELTVGGKNTGNANIEHEYYVVRPRDKYAALKRIVDYN
PDIFGIIFTRTKIESQEIAESLIKDGYNADALHGDLTQQQRDKVMKRFREKNLQVLVATD
VAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGRSGVSIAIVSGRDIGKIRQIERV
IGKKFEKAEVPDGFAVCEKQLFALVHRVHNVTVNEEQIDPYLTRIYEEFADLSKEDIIRR
FASLEFNEFLEYYQDAPDLNVKEGPRGSDEHSMTRRNSGKFTRLFINLGSVDNFTRGDML
RFICDNAGIRGNKIGRIDLKGVYSFFEVENDAAPQVQSGFKQVEHNGRSVRIETSQDGDK
RKPGGGGGYRSYGDRPKKTWSGSEDGGFRPRREYSKSGSGGGFRPKRG
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgactacattcgaatcattaggcttacaggaaaatctgctgaaagccgttaccgacctt
ggcttcgtttccccgacccccatccaggagaaagccatcccggtactgcttggcggcgac
cgcgacttcgtgggcctcgcgcagaccggtaccggcaagaccgccgctttcggcctgccc
ctgctgcaccagctggataccaaagtgcgtaacgtgcagggcctgatcctctgccccacg
cgcgaactgtgcctgcagatcaccaacgacctcaagaacttttccaaatacctcggcgac
gtgaacatcgttgccgtttatggtggcacctcgatcggcatgcagctccgcgatcttaaa
cgcggcgcccatatcgtggttgccaccccgggccgcctcctcgatattatcgagcgcggc
gccatcaacttcgacaacgtacgctacgccgtactcgacgaagcggacgaaatgctgaac
atgggcttccaggaagatatcaacagcattctctccaacacgcccgaagaaaaaaccacc
tggctgttctccgctaccatgcccaccgaagtgcgccgtatcgcgcagaagtacatggag
gatccgtttgaactgaccgtaggcggaaagaacaccggcaatgccaacatcgagcacgaa
tactacgtggtgcgcccccgcgacaaatacgccgcgctgaaacgcatcgtggattacaac
cccgatatctttggcatcatcttcacccgtaccaagatcgaatcgcaggaaatcgcggaa
tcactcatcaaggacggctacaacgccgacgcgctgcatggtgacctcacccagcagcaa
cgcgataaggtgatgaaacgcttccgtgagaagaacctccaggtactggtagctaccgac
gtagccgcgcgcggcatcgatgtggataacgttacgcacgttatcaactacgaactgccc
gacgacgtggagaactacacccaccgctccggccgtaccgcccgcgcaggccgttccggt
gtatccattgccatcgtcagcggccgtgacatcggaaaaatccgccagatcgagcgcgta
atcggcaagaagttcgaaaaggctgaagtgcccgacggattcgccgtttgcgagaaacaa
ctcttcgccctcgttcaccgcgtgcataacgtaaccgtgaacgaagaacagatcgatccc
tatctgacccgcatctatgaagaatttgcggacctcagcaaggaagatatcatccgccgt
ttcgcttccctcgaattcaatgaattcctcgaatattaccaggacgcgccggatctgaac
gtgaaggaaggcccccgtggcagcgacgagcactccatgacccgccgcaattccggcaag
tttacccgcctgttcatcaacctcggttcggtagacaacttcacccgcggtgatatgctc
cgctttatttgtgacaacgctggcatccgcggcaacaaaattggccgtatcgaccttaaa
ggcgtgtattccttcttcgaagtggagaacgatgcggcgccccaggtacagtccggtttc
aagcaggtggaacacaacggccgttccgttaggatcgaaacttcacaggatggcgacaag
cgcaagcccggtggtggcggtggttaccgcagctatggcgatcgtccgaagaaaacctgg
agcggtagtgaagacggtggtttccgtccgcgccgcgagtattccaaaagcggttccggc
ggcggtttccgccccaaacgtggataa
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