Chitinophaga pollutisoli: WJU16_06410
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Entry
WJU16_06410 CDS
T10245
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJU16_06410 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpol03019
]
WJU16_06410 (recQ)
03400 DNA repair and recombination proteins [BR:
cpol03400
]
WJU16_06410 (recQ)
Enzymes [BR:
cpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WJU16_06410 (recQ)
Messenger RNA biogenesis [BR:
cpol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJU16_06410 (recQ)
DNA repair and recombination proteins [BR:
cpol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WJU16_06410 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
DUF742
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
WZN42665
UniProt:
A0ABZ2YTT4
LinkDB
All DBs
Position
complement(1566501..1568666)
Genome browser
AA seq
721 aa
AA seq
DB search
MQALLSLLKQHFGYTQFRHNQQAIIEHVLNGGDTMVLMPTGGGKSICYQLPALAMEGVTI
VVSPLIALMKDQVDALRQNGITAAFLNSTQSMSEQQTVMQMLQQGHVKLLYLAPERLIGE
ANFMQWLAGQKVALFAIDEAHCISHWGHDFRQEYLALGQLKDKFPNVPVIALTATADAIT
KQDILEKLRLRNPAVFENSFNRPNIHYSIRPKKDYYQQLVDYLRQRPDDSGIIYCLSRSG
TESLAEDLQREGFSAAAYHAGLERNLREERQERFLRDDVRIMVATIAFGMGINKSNVRFV
VHADLPKNIEGYYQETGRAGRDGLPSEAILFYSAGDVFKMKRFASVEGNEEQSAVMLRKL
EQMVGLCETITCRRQYLLRYFGEGAPDACGNCDICQGQYEKADGTVAAQKLLSAVYRLQE
RFGLNYVVDFLRGGAGVRDAHQEIKTYGIGKDIGKEQWKQYARELMQLGFLGQSSGEYPV
LKLTDTSWSVLKGEVQVQLTAPAAASAAISTSGSARNGGDIPQPLLLAELKQLRKSLAEK
ERVPPYIIFSDATLAELCTWLPQSLGDLTRISGFGEVKLAKYGEPFLEVMQTYCARHGLQ
SQVHLKAGKTAKPRKSKPETGNSQRASLQFFQEGLAIEEIAARRGLAVSTIESHLADFIR
KGELDIRDVVPDGNRLAWILRTIENASGQGLTQMKEQLGDDVGYGEIRAVLNYYFWRQEQ
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgctgttatcactgctgaaacaacatttcggttatacgcaattccgtcataat
cagcaggctatcatcgagcatgtgctgaatggtggggatacgatggttttaatgcctacg
ggcggcggaaagtctatctgctaccagcttcccgccctggccatggaaggcgttaccatc
gtggtgtcgcccctgatcgcgttgatgaaagaccaggtagacgcattgcgccagaacggc
attacggccgcgttcctcaattccacgcagtccatgtccgaacagcagaccgtcatgcag
atgctgcagcaggggcatgtaaaactgctgtacctcgcgccggaacgcctgatcggcgaa
gcgaacttcatgcagtggctcgccgggcagaaagtcgcgcttttcgcgatcgacgaagcg
cactgtatcagccattggggccacgatttccggcaggaatacctcgccctcggacaactc
aaggataaattccccaacgtgcccgtgatcgccctcaccgctacagcagatgccatcacc
aagcaggatatcctcgaaaaactccggctccgcaaccccgccgtgttcgaaaattccttc
aaccggcccaatatccactacagcatccgccccaaaaaagactattatcagcaactggtc
gattatctccgccagcggcccgacgatagcggcatcatctactgcctctcccgctccggc
accgaatccctcgcggaagacctccagcgcgaaggattctccgccgccgcctaccacgcc
gggctcgaaaggaacctccgcgaagagcgccaggaacgtttcctgcgcgacgatgtccgc
atcatggtggccaccatcgcgttcggcatgggcatcaataaaagcaacgtcaggttcgtc
gtgcatgccgacctgcctaagaatatcgaaggctattaccaggaaaccggccgcgccggc
cgcgacgggctgccatccgaagccattcttttctacagcgccggcgacgttttcaaaatg
aagcgcttcgccagcgtggaaggcaacgaggaacaatccgccgtgatgctccgcaagctg
gagcagatggtgggcctttgtgaaaccatcacctgccgccgccagtatcttttgcgctat
ttcggggaaggcgcccccgatgcctgcggcaattgcgatatctgccagggccagtatgaa
aaggcggacggcaccgtagccgcgcagaaactgctcagcgccgtttaccggctccaggag
cggttcgggctgaattacgtggtggatttcctgcggggaggcgccggcgtgcgcgatgcc
caccaggaaatcaaaacctacggcatcgggaaagacatcggaaaagaacaatggaaacaa
tacgcccgggagctgatgcagctcgggttcctggggcaatcgtccggcgaataccccgtg
ctgaagctcaccgatacgagctggtcggtcctcaagggcgaagtgcaggtgcaactcacc
gcgcccgccgccgcttccgccgctatctccacttccggttccgcccgcaacggcggtgat
ataccgcagcccctgctgctggcggaactcaagcagttgcgcaagagcctggcggaaaag
gagcgggtgccgccttacatcattttctccgacgccacgctggcggaactctgcacctgg
cttccccaaagcctgggcgacctcacccgcatctccggcttcggggaagtgaagctcgcc
aaatacggggagcctttcctggaggtgatgcagacgtattgcgcgcgccatggcctgcaa
agtcaggtgcacctcaaagccggtaaaacggcgaagccccgcaaatccaaacccgaaacg
ggcaacagccagcgcgccagcctgcagttcttccaggaaggtctggccatcgaagagatt
gccgcccgccgggggctcgccgtgtccactatcgaaagccacctggccgattttatccgc
aaaggcgagctggatatccgcgatgtggtgcccgacggcaaccgcctcgcatggatcctc
cgcaccatcgaaaacgcaagcggacaagggctcacccaaatgaaggaacagctcggcgac
gatgtcgggtacggagagatccgcgccgtactcaattattatttctggcgccaggaacag
gcgtaa
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