Chitinophaga pollutisoli: WJU16_10985
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Entry
WJU16_10985 CDS
T10245
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WJU16_10985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpol03400
]
WJU16_10985 (ligD)
Enzymes [BR:
cpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WJU16_10985 (ligD)
DNA repair and recombination proteins [BR:
cpol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WJU16_10985 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
WZN43551
LinkDB
All DBs
Position
complement(2690504..2692654)
Genome browser
AA seq
716 aa
AA seq
DB search
MARKASHTAIEERAPTPGALAGAADLRKQPAAARKKAVKPPGKLPAKVAALLKKAVKRPM
DPNIRPMLATLVNEPPGSDEWIFEIKWDGYRSLAFMDKKATDLRSRNNKSFSQKFYPIQE
ALQAWGIRAVVDGEIVAVSDNGAANFGALQQWRSEADGELRYYVFDILWYDGHDLRDLPL
TDRKTILEALIPATGAILSSPGYATSGKEFMQAVKELGLEGIMAKEKNSTYRSGDRARDW
LKIKSGRRQEAVIGGYTKNEGSKKPFSALLVGFMENGKLVYSGKVGTGFTVRQQQEIMEK
FKPLLRKRQPFTQEPDVNKPSRFRPNPPKAEAFWLKPELVCEVNYTEITSDGVMRHPSFE
GLRDDKPAGEVKAEKETAVSEVTEEKPRRKVKMPLTPAGAKSRKTLLNPSADSQVRQVSG
HELKFSNLDKIYWPKERITKRDMLNYYYQVAPFILPYLAGRPQSMNRYPNGIAGKSFYQK
DVTATAPDWMRQYPYTTSEGEDKNFLVPEDAAAILWMANSGSIEMNPWNSTIQTPDHPDW
CCLDLDPSEKNTFRQVIETALAVKEVIDGLGVKGYPKTSGSTGIHIYIPLNAKYTYDECQ
LFGKIIATKVHEMLPGYTSIERMTRNRKGKLYIDYLQNRPKATLAAPYSLRPKPGAPVSM
PLHWEEVKPGLKITDFNIHNALDRIKSEGDLFKPVLGKGADLQKMLRRLERDSKKA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaaagcttcacataccgccatagaggaacgagctccgacgcccggcgcgctg
gccggcgccgcggaccttcgcaagcagcccgccgctgcccggaagaaggctgtcaaaccg
ccggggaaactccccgcgaaggtggccgccttgctgaaaaaggcggtcaaacggccgatg
gaccccaatatccggcccatgctggccacgctggtgaacgagccgcccggttcggacgaa
tggatcttcgagatcaagtgggacggctaccggtcgctcgccttcatggataaaaaggcg
acggaccttcggtcccgcaacaacaaatccttttcccagaagttctatcccatccaggaa
gcgctgcaggcctgggggatccgcgccgtggtagacggtgagatcgttgccgtgagcgac
aacggtgcggcgaacttcggcgcgctgcagcaatggcgcagcgaggccgacggcgagctg
cggtattatgttttcgatatcctgtggtacgacggccacgacctccgcgatcttcccctt
accgaccgcaaaaccatcctggaagccctgatcccggcaaccggcgcgatactcagtagc
ccggggtacgccacgtccgggaaagagttcatgcaggcggtgaaggagctcggactggag
gggatcatggccaaggagaaaaacagcacttaccgctccggcgaccgggcgcgcgactgg
ctgaagattaaatccgggcgccggcaggaagccgttatcggcgggtatacgaagaatgaa
ggcagtaaaaagcccttctcggcgttgctggtaggatttatggagaacgggaaactggtg
tattccgggaaggtagggacggggtttacagtgcggcagcaacaggagattatggagaaa
ttcaagcccttgctgcgcaagcggcagccattcacgcaggaacctgacgtcaacaagccc
agccgtttccgccccaatcctccgaaagcggaggctttctggttgaaaccggagctggtg
tgcgaggtgaactatacggagataacctccgacggggtaatgcggcacccgtcattcgaa
gggctgcgcgacgataagcctgccggtgaagtaaaagcggaaaaggaaacagccgtgtcc
gaagtaacagaagaaaaacctcgcaggaaagtaaagatgccgctgacgcccgcgggggcc
aaatcccgtaaaacgttgctgaacccttcggcggattcgcaggtgcggcaagtgagcggg
catgaactgaaattttccaacctggataaaatctactggccgaaggaaaggatcaccaag
cgcgacatgctgaactactactatcaggtggcgcccttcatccttccctacctcgccggc
aggccgcaatccatgaaccgctacccgaatggcatcgccgggaaaagtttttatcagaaa
gacgtcaccgctaccgctcccgactggatgcggcaatatccgtatacaacgagcgaaggg
gaagacaaaaattttctcgttcccgaagacgccgccgcgatcctctggatggcaaacagc
ggttccatcgagatgaatccctggaacagcaccattcaaacgcctgatcatcccgactgg
tgttgcctcgacctcgatccttcggagaaaaacaccttccggcaggtgattgaaaccgcg
ctggcggtaaaggaagtgatcgacgggttgggcgtgaagggatatccgaagacttccggc
agcacaggcattcacatctacatcccgctgaacgcaaaatatacttacgacgaatgccaa
ttgttcgggaagatcatcgccacgaaagtgcacgaaatgctgccggggtataccagtatc
gagcggatgacacgcaaccggaaagggaaattatacatcgattatctccaaaaccgtccg
aaagccacgctggcggcgccctattctctccgtcccaagcccggcgccccggtatccatg
cccctgcattgggaagaagtaaagccaggcctgaaaatcaccgatttcaacatccacaac
gccctggaccggatcaaaagcgaaggcgatctgttcaagccggttttgggtaaaggagcg
gatctgcagaaaatgctccggcggctggagcgcgacagcaagaaggcctga
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