Chitinophaga pollutisoli: WJU16_13570
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Entry
WJU16_13570 CDS
T10245
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJU16_13570 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpol03019
]
WJU16_13570 (recQ)
03400 DNA repair and recombination proteins [BR:
cpol03400
]
WJU16_13570 (recQ)
Enzymes [BR:
cpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WJU16_13570 (recQ)
Messenger RNA biogenesis [BR:
cpol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJU16_13570 (recQ)
DNA repair and recombination proteins [BR:
cpol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WJU16_13570 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HTH_45
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
WZN39032
UniProt:
A0ABZ2YGU4
LinkDB
All DBs
Position
3254811..3257012
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AA seq
733 aa
AA seq
DB search
MAVAKVSLLDALHEHFGFDSFKGNQEKIIKSILSGKDTFVIMPTGGGKSLCYQLPALMSP
GVALIVSPLIALMKNQVDLVRSYSSKDNVAHFLNSTLTKAQIKKVRTDLQTGKTKMLYVA
PETLTKQENIDFFRELEISFIAVDEAHCISEWGHDFRPEYRRLKEMIDMISPNLPIIALT
ATATPKVQSDIVKNLELRAPEVFMSSFNRPNLYYEIRPKRKKEQTIKEIVKFIHLHKGKS
GIIYTLNRKTTEELADMLVANGIKAVAYHAGLDATTRAQRQDMFLHEEVEVIVATIAFGM
GIDKPDVRFVIHYNIPKSLENYYQETGRAGRDGLEGNCICFYSYQDVQKLEHLMRDKPLS
EREMGAQLINETVAYAESAVCRRKVILHYFGEKYETEDCGKCDNCRNPKEKIEVKNRVVI
ALKAISALEERFGSDYVVNIITGKSNPQITTFRHDKLDVFGEGKEFDAHFWNSLLRQMML
EGLIEKDIEEYGLLKITEKGRKFMKKPYLIHVALNHQFEEEVAEEEEMAAQEAQPTADPV
LFEMLKDLRKKVAKEKNLPPFVIFLETSLEDMATQFPTTTQELEKIQGVSKGKAIRYGKQ
FIDVISKFVEENDIVKPDDFVLKSVVNKSGLKVFIIQNIDKKMPLETIARNKELSYSQLL
DEMETIVASGTKLNLDYCIDEELDDYAQDEILEYFKGCETSSLALAKEELEEGNYSIEQL
KLMRIKFLVVYGN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgcaaaggtaagtttgttggatgcattacacgaacattttgggtttgattct
ttcaaagggaatcaggaaaagattattaaaagcatactttccggaaaagatacatttgtg
atcatgccaaccggcggcggcaaatcgctttgctaccaactgccggccctgatgagcccc
ggagtagcgctcattgtaagcccgctgatcgcgctgatgaaaaaccaggtggacctggtc
cgttcctacagcagcaaagacaatgtggcccacttcctgaactcgaccctgacgaaagcg
caaatcaagaaagttcgtacagacctgcagaccggcaaaacaaaaatgctctacgttgcg
cccgaaacgctgacgaaacaggaaaatatcgacttcttccgggagctggagatttccttc
atcgccgtggacgaggcgcactgtatctccgaatgggggcacgacttccgtccggaatac
cgccggctgaaagaaatgatcgatatgatcagccccaatctgcccatcatcgccctcacc
gctacggctacacccaaagtacagagcgatatcgtgaagaacctggagctgcgcgccccc
gaagtcttcatgtcctcctttaaccgcccgaatctctattatgagatccgccccaagcgt
aaaaaggagcagaccatcaaggaaatcgtcaagttcattcacctccataaaggcaaatcc
ggcatcatctacaccctcaaccgtaaaaccacggaagagctggccgatatgctcgtggcc
aacggcatcaaggccgtagcctaccatgccggcctcgacgccaccacccgcgcccagcgc
caggatatgttcctccacgaggaagtggaagtgatcgtggccaccatcgctttcggaatg
gggatcgacaagcccgatgtgcgcttcgttatccactacaacattcccaaatcgctggaa
aactattaccaggaaaccggtcgcgccggtcgcgacgggctggaaggtaactgtatctgc
ttctattcttaccaggatgtgcagaaactcgaacacctcatgcgcgacaagccgctgtcg
gaacgggaaatgggcgcccagctcatcaacgaaaccgtagcctacgccgaaagcgccgtg
tgtcgccgcaaagtgatcctgcattacttcggcgaaaaatatgaaaccgaagattgcggc
aaatgtgataactgccgtaatccaaaagagaaaatcgaagtcaaaaaccgcgttgtgatc
gccctcaaagccatttcggccctcgaggagcgcttcggctcggattatgtcgtgaatatc
atcaccggtaaatccaatccccagatcaccacgttccgacacgataagctggatgtgttc
ggggaagggaaggagttcgacgcccacttctggaattcgctcctgcgccagatgatgctc
gaagggctcatcgaaaaagacatcgaagaatacggcctgctgaagattaccgaaaaaggc
cggaagttcatgaagaagccttacctcattcatgtggcgctcaaccaccagtttgaagag
gaagtggcggaagaagaggaaatggcagcccaggaagcacagcctaccgcggatcctgtg
cttttcgaaatgctgaaagaccttcgcaaaaaagtcgcgaaagaaaagaacctgccgccg
ttcgtcatcttcctcgaaacttcgctggaagatatggccacgcaattccccaccaccacc
caggagctggaaaagatccagggtgtgagcaagggcaaggctatccgatacgggaagcag
ttcatcgacgtgatctccaaattcgtggaggaaaacgacatcgtgaagcccgacgacttc
gtgctgaaatccgttgtcaacaaaagtggcctgaaggtgttcatcattcagaacatcgac
aagaaaatgccgctcgaaaccattgcccgcaataaggaactgtcgtattcccaactgctc
gacgagatggaaaccatcgtagccagcggcaccaagctgaacctggactactgcatcgac
gaggagctggacgattacgcgcaggacgagatactggaatatttcaaaggctgcgaaaca
tcgagcctggcgttggcgaaagaagagctggaagagggcaattactcgattgaacagttg
aaattaatgcgtatcaagtttttggtggtttatggcaattaa
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