Chitinophaga pollutisoli: WJU16_14095
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Entry
WJU16_14095 CDS
T10245
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cpol Chitinophaga pollutisoli
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpol03009
]
WJU16_14095 (rlmD)
Enzymes [BR:
cpol01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
WJU16_14095 (rlmD)
Ribosome biogenesis [BR:
cpol03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
WJU16_14095 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Cons_hypoth95
Methyltransf_15
TRAM
Methyltransf_12
N6_N4_Mtase
UPF0020
PrmA
Methyltransf_11
PCMT
TRM5-TYW2_MTfase
Methyltransf_32
Ubie_methyltran
GMP_synt_C
Motif
Other DBs
NCBI-ProteinID:
WZN43875
LinkDB
All DBs
Position
complement(3376739..3378169)
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AA seq
476 aa
AA seq
DB search
MKPSYLCTREEKNVVLENVPVTGYAAEGKALARVDGKVVFLEGGVVPGDVVDVRLSKNKK
DWAEGKATHIRSYSPQRTEPFCEHFGLCGGCKWQMLPYEQQMAYKQQQVEDHLRRIGHLS
FPPLEPILGAEHTRRYRNKLEFTFSNKAYLTDAEMPAKGEEIPRRNALGFHIPRLFDKVL
DINTCHLMEEPANLIKNTIRAYAEKHDLSYYDIRQQQGWLRNLVLRVCSTGEVMANLVVH
HEDEALKGLLDHLLEQVPAITTLLYTINPKKNDTIFDLEPKIWFGKGYVEEKLEDFTFKI
GPKSFFQTNTYQGEALYKVTREFAGLTGKETVYDLYCGTGSIGIFVSRQAKKVVGIELIK
EAIDDAKENAAANGVANAEFFAGDVIDIADDAFFAAHGAPDVIITDPPRAGMHEKLTAKL
LEVAAPRIVYVSCNPATQARDLALLSEKYTIERVRPVDMFPHTHHIENVVLLQRKY
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ataaaaccgtcctacctttgcacccgtgaggaaaaaaatgtagtacttgaaaatgtaccc
gtaaccggctatgccgcggaaggcaaagcgcttgcgcgggtcgacggtaaggtcgtattc
cttgaaggcggcgtggtacccggcgatgtggtggatgtccgcctgtcgaagaataaaaaa
gactgggccgaaggcaaggccacgcacatccgcagctattctccgcagcggacggagcct
ttctgcgaacatttcggcctttgcggaggttgtaaatggcagatgctgccttacgaacaa
caaatggcatacaagcaacagcaggtagaagatcatctccgccggatcggccacctcagc
ttcccgcccctggaacccattctcggcgcggagcatacccgccgttaccgcaacaaactg
gagtttactttttccaacaaagcctacctgacagacgcggaaatgccggccaaaggggaa
gaaattccccgccgcaacgctctcggtttccacatcccgcgccttttcgacaaagtgctg
gatataaatacctgccacctcatggaggagccggccaatctcatcaagaataccatccgg
gcttatgccgaaaagcatgacctttcttattacgatatccgccagcagcagggctggctg
cgcaacctcgtgctgcgcgtctgctccaccggtgaagtaatggccaatctcgttgtccat
cacgaagacgaagcgctgaaaggcctgctggaccatctgctggagcaggttcctgccatc
accaccctgctttacaccatcaatccgaaaaagaacgacacgatctttgacctggaaccg
aaaatctggtttggcaagggatatgtagaggaaaaactggaggatttcacgttcaaaatc
ggtcccaagtcctttttccagaccaatacctaccagggcgaggccttatataaagtgacc
cgtgagtttgccgggcttaccggtaaggaaacggtgtacgatttgtattgcggaacgggc
agcatcgggatttttgtgtcgcggcaggcgaagaaagtggtgggcatcgagctgattaag
gaagcgattgacgacgcgaaggaaaacgcggctgccaacggcgtggccaatgcggaattt
ttcgcgggagacgtgatcgacattgcggatgatgcgtttttcgccgcccacggcgcgccg
gacgtcatcattaccgaccctccgcgcgcgggcatgcacgaaaaactgacggccaaactg
ctggaagtggcggcgccccggatcgtgtacgtgtcctgcaaccccgccacacaggcgcgc
gacctcgcattgctgagcgaaaaatacaccatcgaaagggtgcggccggtggacatgttc
ccccacacccaccatatcgagaacgtagtgctgctgcagcgtaaatattaa
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