Chitinophaga pollutisoli: WJU16_17160
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Entry
WJU16_17160 CDS
T10245
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol03410
Base excision repair
cpol03430
Mismatch repair
cpol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
WJU16_17160 (recJ)
03430 Mismatch repair
WJU16_17160 (recJ)
03440 Homologous recombination
WJU16_17160 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpol03400
]
WJU16_17160 (recJ)
DNA repair and recombination proteins [BR:
cpol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
WJU16_17160 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
WJU16_17160 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WJU16_17160 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WZN39711
UniProt:
A0ABZ2YJ34
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All DBs
Position
complement(4089877..4091586)
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AA seq
569 aa
AA seq
DB search
MQKRWTVKKYQPSQEQQLQAALKIHPILCRLLVQRGILKFEEARHFFRPSLDDLHDPWLM
KDMDKAVSRIEEAFFRREKILVYGDYDVDGTTAVATVYGFLQQLYDNIEFYIPHRYREGY
GISMQGIEYARDNEFGLVIALDCGIKSIDYIAHAAEIGIDFIICDHHLPDAILPPAVAIL
NPKQEGCPYPYKELSGCGIGFKLISALAQKKGIPMADVYQYLDLVATSIAADIVPMTGEN
RVLAFHGLKQVNEVPSPGIKALLTLSNLKEKLTTSNLVFVIAPRVNAAGRMDDARKAVNL
FMEKDDEKALAIAEMLHGDNQERKGIDMSITQEAVSIIQNDAGMIARKSTVLFQPHWHKG
VVGIVASRLIDKYYYRPTIILTQSNDKVAGSARSVSGFNVYEAIHQCKDLLENYGGHFYA
AGMTLKPENVPAFQERFEAVVSATISPDLLIPEIVIDSEVWLSDLTPAFYNILRQFEPLG
PENLRPVFLARNLTDTGFSRIVKDEHIKLSVRQRNGTPFSGIGFYMADKFDFIAGKKPFD
MVFTVEENEWNGNTTLQLKAIDIRPAAYA
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaacgctggacagtaaagaaatatcaaccatcacaggagcaacagctccaggca
gctttaaaaatccatcccatactatgccgcttactggtacaaagagggatcctgaaattt
gaagaagcccgccatttcttcaggccgtcgctggacgatctccacgatccctggctgatg
aaggacatggacaaagcagtttcccgcatcgaagaagcattcttccgccgcgaaaaaatc
ctcgtgtacggcgattacgatgtggacggcaccaccgccgtcgccaccgtgtacggcttc
ctccaacaactgtacgacaatatcgaattttatatcccacaccgctacagggaaggttac
ggcatctccatgcaaggcatcgaatacgcgcgcgacaatgaattcggcctggtcatcgcg
ctcgactgcggcatcaaatccatcgattatatcgcacacgccgcggaaatcggtatcgat
ttcatcatctgcgaccaccaccttcccgatgccatcctgccgccggccgttgctatactc
aatcccaagcaggagggctgtccctacccttacaaggagctctccggctgcgggatcgga
tttaaactcatcagcgccctcgcccagaaaaaaggcattcccatggccgatgtataccag
tacctcgacctggttgccaccagcatagcggccgatatcgtacctatgaccggcgaaaac
cgcgtgctcgcattccacggcctcaaacaggtcaacgaagtgccttcgcccggtatcaaa
gcccttctcaccctcagcaacctgaaggaaaaactcaccacgtccaacctcgtattcgtg
atcgccccgcgcgtgaacgctgccggaaggatggacgacgcccgcaaagccgttaacctc
ttcatggaaaaagatgatgagaaagccctcgccatcgctgaaatgctccatggcgacaac
caggaacgcaaagggatcgacatgagcatcacccaggaggccgtgagcatcatccaaaac
gacgccggcatgatcgcgcggaagtccaccgtcctcttccagccgcactggcacaaaggc
gtagtgggtatcgtagcatcgcggctcatcgataaatattattaccggcccaccatcatc
ctcacccagagcaacgacaaagtggctggctccgcgcgctccgtatcagggttcaacgtg
tacgaagccatccaccagtgcaaagacctgctggaaaattacggcgggcacttctacgcc
gcgggcatgaccctcaaacccgagaacgtcccggccttccaggagcgcttcgaggccgtg
gtatccgctaccatcagccccgacctcctcattcccgaaatcgtcatcgactccgaagtg
tggctttccgacctcacacccgctttctataatatcctccgccagttcgaaccgctgggc
cccgaaaacctgcgccccgtattcctggcccgtaacctcaccgataccgggttttcccgc
atcgtgaaagacgagcacatcaagctctccgtccgccagcgcaacggcaccccgttttca
ggcattggcttctacatggccgacaaattcgacttcatcgccggtaaaaaaccttttgac
atggtgtttacggtggaagaaaacgaatggaacggcaacaccaccctacagctaaaagcc
atcgacatacggcccgccgcctacgcctga
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