Chitinophaga pollutisoli: WJU16_18925
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Entry
WJU16_18925 CDS
T10245
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WJU16_18925 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpol03021
]
WJU16_18925 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpol03400
]
WJU16_18925 (rpoC)
Enzymes [BR:
cpol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WJU16_18925 (rpoC)
Transcription machinery [BR:
cpol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WJU16_18925 (rpoC)
DNA repair and recombination proteins [BR:
cpol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WJU16_18925 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WZN40049
UniProt:
A0ABZ2YKX3
LinkDB
All DBs
Position
4460991..4465289
Genome browser
AA seq
1432 aa
AA seq
DB search
MAIKKENRPKSNFSSITISLASPDTILERSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECYCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIRLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLETIVYYERYVVIQSGVKQEKGLNYADLLTEEEYLDILDTLPKDNQLLPD
EDPNKFIAKMGAEAVEMMLSRIDLDGLSYQLRNQAATETSQQRKAEALKRLSVVEAFRDA
NGRVDNRPEWMVMQYIPVVPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVDRKEA
VVWDILENVLKGHPVMLNRAPTLHRLSIQAFQPKLVEGKAIQLHPLVCSAFNADFDGDQM
AVHVPLSNAAILEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYISKGKKSTETEIVK
GEGKAFYSAEEVIIAHNEGRVDLHANIRVKADVRKEDGTLERKLIETTVGRVIFNVYVPK
EAGFVNALLTKKSLREIIGDIIKATDIPKTAKFLDDIKQLGFRTAFRGGLSFNINDLIIP
DAKQLMIDGAAGEVDEVWDNYNMGLITNNERYNQIIDIWSRVDTKVTETLIRELASDKQG
FNSVYMMLDSGARGSKQQIKQLAGLRGLMAKPRKSGSSGSEIIENPILSNFKDGLNVLEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVITEEDCGTLRGIATSALKDNEEVV
EPLYDRILGRTSLHDVFNPSNDEELFVAAGEQITEEIARKIEESTIETVEIRSVLTCESK
RGVCVRCYGKNLATGYTAQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASVESTLA
AKFDGTVQFDGLRTTTFENNEGEKVQVVIGRTGELRIMDVKNDRLLITNNIPYGSTLNVK
DGQKVVKGDVICTWDPFNAVIVSEIAGKIRFDSIIEGITFREEADEQTGHREKVVIETKD
KNKIPSLLVDGNKEVKSYNLPVGSHIIVEEGVNVRAGQVIVKIPRVIGKLRDITGGLPRV
TELFEARNPSNPAIVSEIDGVVAFGNIKRGNREIIIESRESHVKKYLVPLTRHILVQDGD
FVKAGTALSDGSITPADILSIKGPFAVQEYLVNEIQEVYRLQGVKINDKHIEVIVRQMMR
KVTIEDPGDTRFLEGDTTDKFEFFEENDQIFDKKVVTEAGESATMKAGQIVTLRQVREEN
SVLRRSDKKLVEYRDAETATSSPLLLGITKASLGTHSWISAASFQETTKVLSSAAINGKT
DDMLGLKENVITGHLIPAGTGLREFENMIVGSKEEYDILASSKEVFQFDEEE
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggccatcaagaaagaaaatcgtcccaaatcaaattttagcagcattaccatcagtctc
gcttcaccggacaccatcctggagcgttcttatggcgaagtgctgaaacccgaaaccatc
aactaccggacctacaagccggagcgcgatggtttgttctgcgaaaggatcttcggtcct
gtaaaggattacgagtgctattgcggaaagtataagcgtatccgttataagggcattgtg
tgcgaccgctgtggggtagaagtgacagagaagaaagtgcgtcgtgaaagaatggggcac
atccgcctggtggtgcccgtagttcatatctggtatttcaaatcattacccaataaaatc
ggttacctgctcggcatgagctccaagaaactggaaaccatcgtttattacgaacgttat
gtggtgatccagtctggtgtgaagcaagagaaaggcctcaactatgcagacctgctgacg
gaagaagagtacctggatatcctggatacccttccgaaagacaaccagctgctgcccgac
gaggatccgaacaagttcatcgcgaagatgggcgctgaagcggtagaaatgatgctttcc
aggatcgacctggacggcctttcctaccagctccgcaaccaggctgccacggaaacttcc
cagcagcgtaaagccgaggccctcaaacgcctcagcgtggtggaagccttccgcgatgcc
aatggccgtgtagacaaccgcccggaatggatggtgatgcaatacatccccgttgttccg
ccggaattgcgcccgctcgttcccctggacggtggccgcttcgcgtcttccgacctcaac
gacctctaccgccgcgtaatcatccgcaacaaccgtctgaaacgcctgatcgagatcaag
gcgcccgaggtgatcttgcgtaacgaaaaacgtatgctgcaggaagccgttgactccctg
ttcgataacagccgtaaatccaatgccgtgaaagcggaaggcggacgcgcgctgaaatcg
ctctccgacgtactgaaaggcaagcaaggccgtttccgtcagaaccttctcggtaaacgt
gtggactactccggtcgttccgttatcgtggtaggccctgaactgaaactgcatgagtgc
ggccttccgaaagatatggctgcggagctgttcaaaccgttcattatccgcaaactcatt
gaaaggggcatcgttaaaaccgtgaaatcggccaagaagctggtagaccggaaagaagcc
gtggtttgggacatcctggaaaacgtactgaaaggtcacccggtgatgctgaaccgtgct
ccgaccctccaccgtttgtccatccaggctttccagcccaaactggtggaaggtaaagcg
atccagctgcacccgctcgtgtgttccgcgttcaacgccgactttgacggtgaccagatg
gcggtacacgtgcctttgagcaacgccgcgatcctggaagcacagctgctgatgctgtct
tcgcacaacatcctcaacccgcagaacggtacgccgatcaccctgccttcccaggacatg
gttctcggtctgtactacatctccaagggtaaaaaatccaccgaaaccgaaatcgtgaaa
ggcgaaggcaaagctttctactccgcggaagaggtgatcatcgcgcacaacgaaggccgt
gttgacctgcacgccaacatccgtgtaaaagcggacgttcgcaaggaagacggtaccctg
gagcgcaaactgatcgaaactacggtgggccgtgtgatcttcaacgtatacgttccgaag
gaagcaggttttgtaaacgccctgctgaccaagaaatcactgcgtgaaatcatcggcgac
atcatcaaagcgaccgacattccgaaaaccgcgaagttcctggacgacatcaagcaattg
ggtttccgtacggcattccgcggtggtctgtccttcaatatcaatgacctgatcatcccc
gacgccaagcagctcatgatcgacggtgctgccggcgaggtggacgaagtgtgggataac
tacaacatgggtctgatcacgaacaacgagcgttacaaccagatcatcgacatctggagc
cgtgtggacacgaaagtgaccgaaacgctgatacgcgagctggcatccgacaaacagggc
ttcaactctgtgtacatgatgcttgactccggcgcccgtggttccaaacaacagattaaa
cagctggccggtcttagaggtctgatggcgaaaccgcgtaaatccggttcctctggttcc
gagatcatcgagaaccccatcctttccaacttcaaggacggtctgaacgtattggaatac
ttcatctccacgcacggtgcccgtaagggtcttgcggatacggcactgaaaacggcggat
gcgggttacctgacccgtcgtctcgttgacgttgcgcaggacgtggtaatcaccgaagaa
gattgcggcaccctccgtggtatcgcgacttccgcgctgaaagacaacgaagaagtagta
gaaccgctgtatgatcgtatcctcggccgtacgtctctccacgatgtgttcaatccttcg
aacgacgaggagctcttcgttgccgcaggcgaacagatcactgaagagatcgcgcgtaag
atcgaggaaagcactatcgaaacggtggaaatccgttccgtactcacctgcgaaagcaaa
cgtggcgtgtgcgttagatgctatggcaaaaacctggcgaccggttacacggcgcaacgt
ggcgacgctgtgggtatcatcgcggcacagtccatcggtgagcctggtacacagctgaca
ctgcgtacgttccacgtaggtggtgtggccggttccgcatcggtagaatccaccctggca
gcgaaattcgacggtaccgtacagttcgacggcctccgtaccactaccttcgaaaacaac
gaaggcgagaaagtacaggtggtaatcggccgtaccggtgagttgaggatcatggacgtg
aaaaacgaccgcttgctcatcaccaacaacatcccttacggttctaccctgaacgtgaaa
gatggccagaaagtggtgaaaggcgacgtgatctgcacatgggaccccttcaacgccgtt
atcgtttccgaaatcgccggtaagatccggttcgacagcatcatcgagggtatcaccttc
cgtgaagaagctgacgagcaaaccggtcaccgcgagaaagtggttatcgaaactaaagac
aagaacaagatcccgtccctcctcgtggatggcaataaagaggtgaaatcgtacaacttg
ccggtgggttcccacatcatcgtcgaagaaggcgtgaacgtgagagctggtcaggtgatc
gtgaagatcccccgcgtaatcggtaagctccgcgacatcaccggtggtctgccccgtgta
actgagcttttcgaagcccgtaacccgagcaaccccgccatcgtatctgagatcgacggt
gtagtagcttttggtaacatcaagcgtggtaaccgcgagatcatcatcgaaagccgcgaa
agccacgtgaaaaagtacctcgttccgctgacccgccacatcctggtacaggacggcgac
ttcgtgaaagcaggtaccgcactgtccgacggttccatcaccccggccgatatcctctcc
atcaaaggtccgtttgccgtacaggagtacctcgtaaacgagatccaggaggtataccgc
ctgcagggtgtgaagatcaacgacaaacacatcgaggtgattgttcgccagatgatgcgc
aaggtaaccatcgaagatccgggagatacccgcttcctcgagggcgatactaccgacaag
ttcgagttctttgaagaaaatgaccagatcttcgacaagaaagtggtaaccgaagccggt
gaatccgctacgatgaaggctggccagatcgtaacactccgccaggtacgtgaagaaaac
tccgtgctgcgccgctccgacaagaagctggtggaataccgcgacgcggaaacggctact
tccagcccgctcctcctcggtatcactaaggcttcgctcggtacgcacagctggatctcg
gcagcgtccttccaggaaacgaccaaagtactgtcttccgcagccatcaacggcaaaacg
gacgatatgcttggcctgaaagagaacgtaatcacgggtcacctgataccggccggtacc
ggtctgagagaattcgagaacatgatcgtaggttcgaaagaagaatacgacatcctcgca
tcctcgaaagaagtgttccagttcgacgaagaagaatag
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integrated database retrieval system
