Crocodylus porosus (Australian saltwater crocodile): 109306319
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Entry
109306319 CDS
T07440
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo04510
Focal adhesion
cpoo04512
ECM-receptor interaction
cpoo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109306319 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109306319 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109306319 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpoo04147
]
109306319 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
cpoo00536
]
109306319 (COL4A1)
Exosome [BR:
cpoo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109306319 (COL4A1)
Glycosaminoglycan binding proteins [BR:
cpoo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109306319 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109306319
NCBI-ProteinID:
XP_019385211
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MRPRRGAGLALAALLLLLSREPAGVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGLIGFP
GMQGPEGPAGPPGFKGDTGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPLGPPGIP
GCNGTKGERGPLGPPGLPGLTGSIGPPGPPGIKGDPGEVISIRPPTLKGEKGFPGHPGLP
GIPGFPGIQGPTGPPGIQGEPGPPGPPGPPGEKGHMGLSFQGPKGEKGEQGVTGPPGPQG
PDSQRKEKGSTVIYGEKGEPGEKGDPGSPGQSGSSIKGEKGERGKPGPRGKPGKDGEEGP
KGERGPLGEHGFPGPPGSPGPKGDKGEQGFPGPPGAIIGTGTVDAFGEKGETGPPGFPGP
KGERGEKGFPGPPGRPGAPGLPTPGLQGPPGIPGDRGEKGDPGLSGISLPGPPGRDGLQG
PPGSPGPPGPPGNGILDCAPGERGDPGPPGPEGQSGFRGERGQKGDKGDTCTTCDALILP
GLPGLQGPPGPKGFPGQTGAKGDRGLPGLNGIQGVPGPPGTPGLLGSPGAKGEPGDIYFD
TSLKGEKGAPGFPGASGLPGREGRPGRDGTPGLQGPKGASGTIGLKGERGPPGAGGFPGI
RGDKGLPGPPGIGPAGPPGDKGEQGRTGDPGIPGTKGEKGSSGMPGLPGTPGPKGSPGIE
GYPGSPGSHGEKGEKGLPGLHGISGLKGQQGDPGLPGSPGASGKKGEPGYEGIPGVPGIK
GDQGLPGRGLPGSSGAKGDKGAKGDVGFPGSPGSPGIPGSKGEPGFVGPQGPHGQPGLPG
LPGRQMEGPKGDRGPQGQPGLPGLPGPAGSPGLPGLEGAKGEKGAYGWPGPPGRPGVKGD
QGFQGMPGSPGLPGILGQKGDMGPQGVPGHPGVKGSPGFPGLKGEHGDQGLPGSKGLQGP
PGPPGLFQLIKGDQGVPGPMGPVGPKGFPGPQGPKGQQGVTGPEGIHGSPGVPGFDGNPG
QKGETGPFGPPGPRGYPGPPGPDGLPGAMGLPGAASVAHGFLVTRHSQTTEEPACPFGTK
LMYYGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLST
PEPMPMSMAPITGDNIKPFISRCSVCEAPAMVIAVHSQTVQIPLCPEGWSSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATVERNEMFRKP
APSTLKAGDLLSNVSRCQVCMRKT
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcggcggggcgcggggctggcgctggccgcgctgctgctgctgctgagccgg
gagccggccggggtgtccgccgcgggatgtagtggctgtggaaaatgtgactgcagtgga
gtaaaagggcaaaaaggtgaaagaggtttgcctggacttcaaggtctgatagggtttcct
ggaatgcaaggacctgaaggtcctgctgggccgccaggttttaagggtgatactggagaa
ccagggctgccaggaacaaagggaacacgaggcccaccaggttcgtcaggatatccagga
aaccccggccttccgggtatccctggacaagatggtccacttggtccacctggtatccca
ggttgcaatggcacaaagggtgaaagaggtccccttggtcctccaggcttacctggattg
actgggagcataggacccccaggacctcctggaattaagggagatccaggcgaagtaatc
agcatcagaccacctaccctaaagggtgaaaaaggctttcctggccatcctggactacca
ggtataccaggatttccaggaatccaagggcccactgggccacctgggattcaaggagaa
ccaggtccgccagggccaccgggacctccaggagagaagggtcatatgggcttgagcttt
caaggaccaaaaggtgaaaagggtgaacaaggagttacaggtcctccaggtccacaagga
cctgactcgcaacggaaagagaaagggagtacagtcatatatggagaaaagggagaacca
ggtgaaaaaggagatcctggatcgccaggacagtcagggtcaagtatcaaaggggaaaag
ggtgaacgtggaaaacctggcccacggggaaaacctggaaaagatggcgaggaaggacca
aaaggagaacggggaccattgggcgagcacggatttccagggccaccgggtagccctggg
cctaagggggataagggagaacaaggttttccaggacctccaggagcaattataggcaca
ggaacagtggatgcctttggtgaaaaaggagagactggacctccaggttttccaggacca
aagggtgaaagaggtgaaaaaggttttccaggtccaccaggacgcccaggtgctccaggt
ttacctactccagggttgcaaggtccacctggcatacctggtgacagaggtgaaaagggt
gatcctggtctctctggaatttctttgcctggaccacctgggagagatggtttacaaggg
cctcccggctcaccaggccctccgggcccaccaggaaatggaatcttggattgtgcacct
ggagagcgtggtgatcctggtcctcctgggcctgagggacaatcaggattcagaggagag
agaggacagaaaggtgataaaggtgacacttgcaccacatgcgatgcgttaatacttcct
ggactcccaggattacaagggccacctggacccaaaggctttccaggacagacaggtgcc
aaaggggataggggcttgcctggactcaatggtattcaaggagtgcctggacctccaggt
acaccaggactgcttggtagcccaggggcaaagggagagcctggagacatttactttgat
actagcctaaaaggtgaaaaaggagctcctggtttcccgggagcatcaggattacctgga
agagaaggaagaccaggaagagatggcacaccaggtctccagggtcctaaaggggcctcg
ggtacaattggcttgaaaggagaacgtggtccccctggtgcaggtggatttccaggaata
cgtggtgacaaaggccttcctggacctccagggattggacctgctgggccacctggtgac
aagggagaacaaggaagaacaggtgatccaggcatacctgggacaaaaggtgaaaaaggt
agcagtggaatgccaggactgcctggtacccctggtccaaaaggatcacctggtattgaa
gggtatccaggtagcccaggtagccatggggagaagggtgaaaaaggactccctggcttg
catggcatctcaggcttgaaaggacagcaaggtgaccctggcctgccaggttctcccggt
gctagtggaaagaaaggtgaaccaggttatgagggaatcccaggtgtgcctggtatcaag
ggtgatcaaggtcttccagggagaggacttccaggaagttcaggtgcaaagggagataaa
ggtgcaaaaggtgatgtgggttttccaggatccccaggaagcccagggatcccaggctca
aaaggagaaccaggatttgttggcccacagggtcctcatggtcaaccaggtcttcctgga
ctcccaggcagacaaatggaaggccctaaaggagacagaggaccccaaggccaacctgga
ttaccaggtctacctggtccagcgggatccccaggactcccaggactggaaggtgccaaa
ggagaaaaaggagcctatggttggcctggacctcctggaagacctggagtcaaaggtgat
cagggatttcaaggaatgcctggtagtcctggtttaccaggcattcttggtcaaaagggt
gatatgggacctcaaggcgttccaggacatccaggtgtgaaaggatctcctggcttccca
ggtctcaaaggagaacatggtgaccagggtcttcctggatcaaaaggtttacaaggtcca
cctggtcctccaggtctttttcagttgattaaaggggatcaaggtgtacctggccctatg
ggacctgttggtcctaaaggattccccggccctcagggtccaaaaggacagcaaggagtc
acaggacctgaaggtatacatggttcacctggtgtcccagggtttgatggcaaccctggt
cagaaaggggaaactggtccttttggtcctccaggcccaagaggatacccaggcccacca
ggccctgatggtttacctggggcaatgggtttaccaggtgcagcatctgttgctcatggt
ttccttgttactagacacagtcaaaccactgaggaaccagcatgtccatttggaactaaa
ctcatgtactatggttactccttgctttatgtacaaggcaatgaaagggcacatggtcag
gatttgggcacagcaggaagctgtcttcgtaaatttagcacaatgcctttcttattttgc
aacatcaacaatgtatgcaactttgcatcaaggaatgactattcctactggctgtctact
cctgaacccatgccaatgagtatggctcctatcacaggtgacaatatcaagccattcatc
agtcgatgctctgtatgcgaggctcctgccatggtaatagcagttcacagtcaaacagtt
caaataccattgtgccctgaaggctggagttcactttggattggttactcctttgtaatg
cataccagcgctggtgccgagggctctgggcaggctctggcatctccaggttcttgttta
gaggagttccgcagcgctccttttatagaatgccatggtcggggaacttgtaactactac
gcaaatgcttacagcttctggcttgccactgtagagagaaacgagatgttcaggaaacct
gctccttcaactctgaaagcgggggatctactctcaaacgttagccgttgtcaagtctgt
atgaggaaaacataa
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