KEGG   Crocodylus porosus (Australian saltwater crocodile): 109306620
Entry
109306620         CDS       T07440                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
cpoo  Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03410  Base excision repair
cpoo04140  Autophagy - animal
cpoo04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:cpoo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109306620 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    109306620 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    109306620 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpoo03036]
    109306620 (HMGB1)
   03400 DNA repair and recombination proteins [BR:cpoo03400]
    109306620 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpoo04147]
    109306620 (HMGB1)
Chromosome and associated proteins [BR:cpoo03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    109306620 (HMGB1)
DNA repair and recombination proteins [BR:cpoo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     109306620 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     109306620 (HMGB1)
Exosome [BR:cpoo04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   109306620 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_WDHD1 HMG_box_5 Nop14
Other DBs
NCBI-GeneID: 109306620
NCBI-ProteinID: XP_019385665
Ensembl: ENSCPRG00005011754
UniProt: A0A7M4EYS7
LinkDB
Position
Unknown
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKVRYEREMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEYPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKTDTGKKVVAKAEK
SKKKKEEEEDEEEDEDEEEDEEEEEEEEEDDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atgggcaaaggtgatcctaagaagccgaggggtaaaatgtcttcatatgcattctttgtg
caaacttgccgagaggagcacaagaagaagcatccagatgcttcagtgaacttttcagag
ttctcaaagaaatgttcagaacgatggaagactatgtctgctaaggagaaaggcaagttt
gaagatatggcaaaagctgacaaggttcgttatgaaagagagatgaaaaattatgtacca
cccaaaggggaaacaaaaaagaagttcaaggatccaaatgcacccaagaggcctccttct
gcttttttcttgttttgctctgagtttcgtccaaaaatcaaaggtgaatatcctgggctg
tccattggagatgttgcaaaaaagctgggagagatgtggaacaacactgctgcagatgat
aaacagccttatgaaaagaaggctgctaaactgaaggagaagtatgaaaaggatattgcc
gcataccgggccaaaggaaagactgatacaggcaaaaaggtagttgccaaggctgagaag
agcaagaaaaagaaggaggaggaggaagatgaagaggaggatgaagatgaagaggaggat
gaagaagaggaagaggaggaggaagaggatgatgatgatgatgaataa

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