Crocodylus porosus (Australian saltwater crocodile): 109306812
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Entry
109306812 CDS
T07440
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109306812 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpoo03021
]
109306812 (PCF11)
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109306812 (PCF11)
Transcription machinery [BR:
cpoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109306812 (PCF11)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109306812 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
CID
Motif
Other DBs
NCBI-GeneID:
109306812
NCBI-ProteinID:
XP_019385952
Ensembl:
ENSCPRG00005016193
LinkDB
All DBs
Position
Unknown
AA seq
1672 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPTSGVTSSGVSTPPAVPE
IQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGTSTMSPVPAP
SKQHVCQTPQMSVKASPVQSERSRPSPIPQVHDIKLVNRDPRLNRMAQHSSHAKEQSHRK
EFLSTTTNQSDIKVNKTVQPEKQNTSKQEKVKSNEKIQKKELDQAETKSKSPSPLKNKLS
HTKDTKTPTCENMKLSDISKRDPRLKKHLQEKPDVKDDDTKEKRKSIEKKEKEEHKTSEH
RPVGSRNKVINGVVQKQDANTEDSEKQGGKPGRSSNRKRSRSRSPKSRSPSAHSPKRRDR
RSPKRRLRSLSPTSSTPKIGKVRQSGLKQSHAEEFTQTTREERNSSKRNVKQDVRDPRRL
KKTQDERPQETVNQHSAKSTPEPKENVENWQGPKSSKRWKSGWEESKNLQQSEEHQGLGK
SPHQRHRENWAAGKGILSPRAPKLQHRLSVDANLQIPKELTSASKRELLKKANERLASGE
ITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTDEKCGVKKKPLLSDAELTYYEHKAKLK
RTQVQHAFPRLDLLDPDDILDYHLTDALLSGLECEQAKKRAQFDRKEQFGERSRRHSPIS
GNRPFTDNLSPHESERRHDEQNSSKGTSSSKSFDPYDSWGESDEFRDVFGQQGKSTPEFQ
KIDGEGFCKFNNPEDRQMLGQSGVREEPRSPFSERFKRSRYEDPEKTAFTDSPGSRFGGI
EVKQRITALMEDRPLFDGPSRPPVSRGGGDGQASHFVDGPSNNSNSRIDGPPAQASLRFE
GPLGQVGAGGAPQFDGPLGQAGGGGGMRFDGPPGQIGGGLRFEGPSGQVGGGGAIRFEGP
LGQVGNALRFEGPAGPSVGSLRFEGPTGQPVGSLRFEGPRGQPSGGLRFEGPHGQPMGPR
VHPGGGLRFEGPHGQPMGPHSQPGGGLRFEGPHLQQLGPHGQPAGGMRFEGPHSQPLGPH
GQPGGGLRFEGPHGQPVGPHVQAGGSGLRFEGPHIQPGVGPRFEGPSVQTGGGLRFEGPL
GQTGPRFDGCHSSRFDGQPGQLSLLQRFEGLHGQPGPRFERAPGQQTPPRFEGLPGQQAR
FDTAIPQRFDGPQHQQASRFDMPLGLQGPRFENVANHPASRLETSPYGQTGPYSEHPNQT
YNGPSHGMQFQRPEMFDGSQGPNFNGPVGPTAQNYPSLLNRASGHYFDDKNLRGPQYGNF
SNMPNSMSVGNAQQPHQVPVLSVPSGQPVPYGQGQQYLPVRGQNPGGFLPNQADNHLGQL
DVNELFSKLVSTGILKLSKTDSTSAQANETVPQPAPEEEEDDQDQSEDQDVPDLTNFTVE
ELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRW
YYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGADESCE
ICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLN
IMLNIVKQETEEPACNSPTVTEPPVDTPAACTEESTPASTDIKTEPEEVESV
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgttggaagagagtatcttactgcgtttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctctacatgggatgatattttccctttgaagaagctatatgcc
cttgatgtcagagtcaactcattagatcctgcttggcctattaaacctctacccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgcctgaggaacct
tctacacctacctctggagtcacttcgtctggtgtctcaactcctccagctgttcctgaa
atacagaagaatttgacacaagagcaactaataagacagcaactgcttgcaaagcaaaaa
cagttgttagaacttcagcagaaaaaattagagctggagctagaacagactaaagcacaa
ttggcggtttctcttagtgttcagcaaggaacatctaccatgagtccagttccagcacct
tccaagcaacatgtgtgtcaaactcctcagatgtcagttaaagcttcccctgtgcaatct
gaaaggagcagaccttctccaatccctcaagttcatgatattaaattagtgaacagagat
cctcgacttaataggatggctcagcattcctctcatgctaaagagcaaagtcatcggaaa
gaatttctgtcaaccacaacaaatcagtctgatatcaaggtcaataaaactgtgcaacct
gaaaaacaaaacacatcaaagcaagaaaaggtaaaatcaaatgaaaaaatacagaagaaa
gaacttgatcaggcagaaacaaaatctaaatcgccatcccctttgaaaaataaattatcc
catactaaagatactaaaactccaacgtgcgaaaacatgaaattgtctgatattagtaag
agagatccaagactaaaaaagcatcttcaggagaagccagatgttaaagatgatgacaca
aaagaaaagaggaaaagtatagagaaaaaagaaaaagaggaacataagacatctgaacac
agacctgttggtagtagaaataaagtaattaacggtgttgtacagaaacaagatgccaac
acagaagattcagaaaaacagggtggaaaacctggacgatccagtaataggaaaaggtca
cgatcacgctctccgaagtctcgttcaccatctgcacattctccaaagaggagagatagg
cgatcgcccaaaagaagactgaggagtctgtcccctacctcctcaactccaaaaattgga
aaggttcgtcagtcaggtcttaaacagtctcatgctgaggaatttacccaaaccacaaga
gaggaaagaaactctagtaagagaaacgttaaacaagatgtgagagatccgaggagattg
aaaaaaactcaagatgagagaccgcaggaaactgtaaatcaacattctgcaaaatccacc
ccagaaccaaaggagaatgtggagaattggcaaggtcccaaatcaagcaaaaggtggaaa
tctggttgggaggaaagtaaaaacttacaacagagtgaagaacatcaaggacttggtaaa
tcaccacatcaaaggcatagggaaaattgggcagctggtaaaggaattttgtcacctcgc
gcaccgaaactgcagcatcgattgagtgtggatgccaatttgcagattcccaaagaattg
acttctgcaagcaagagagaattactcaaaaaagcaaatgaacgtctggcgtctggtgaa
ataacacaagatgagttcctggttgtggcacatcagattcgtcagttgttccagtatcag
gaaggaaagcacagatgcaatgtgtgggatagtcctacagatgaaaaatgtggcgtgaaa
aagaagccccttctttcagatgctgaattaacatactatgagcataaagctaaattgaaa
agaacacaagttcaacatgcatttccgaggcttgatttgttggatcctgatgatatttta
gactaccacttgacggacgcattgctttctggactggaatgcgagcaagcaaaaaaacga
gcacagtttgaccgaaaagagcagtttggagaaaggtcaagacggcattctccgatatcg
ggtaatagacctttcactgataatctttcaccacatgaaagtgagcgaagacatgatgag
cagaattcctctaaaggaacaagcagttctaaaagctttgatccttatgatagctgggga
gaatcagatgaatttagagatgtgtttgggcaacaagggaaaagtacaccagaattccag
aaaattgatggagagggattttgcaaatttaataatcctgaagacaggcaaatgcttgga
cagagtggtgttcgagaagaaccaagatctccgttcagtgaacgtttcaagagatctaga
tatgaagatccagagaaaacagcatttactgacagtcctgggtcaagatttggaggcatt
gaagtaaagcagagaataactgcattgatggaagacaggcctctgtttgatgggccatct
agaccgcctgtttcaaggggagggggagatggacaagcaagtcattttgttgacgggcca
tctaacaactcaaattctagaattgatgggccacctgcacaggcctctttgaggtttgaa
gggccactaggacaggttggtgctgggggtgcccctcagtttgatggaccattaggacag
gcaggaggagggggtggcatgcggtttgatggaccaccaggacagataggcggtggcctt
aggtttgaggggccctcagggcaggtaggtggagggggtgcaatcaggtttgagggccct
cttgggcaggtagggaatgctttgaggtttgagggacctgcgggcccatctgtgggtagt
ctcaggtttgagggccctacaggtcagcctgtgggtagtctcaggtttgaggggcctcgt
ggtcagccatcaggtggtctcagatttgagggacctcatggtcaacctatgggccctcgt
gttcatccagggggtggtctcagatttgagggaccccatggtcaacctatgggacctcat
agccaaccagggggtggcctcaggtttgagggaccacatttacaacaactggggccccat
ggtcaaccagcaggtggtatgcgatttgaaggaccacatagtcagcctttgggaccacat
ggtcaaccggggggtggtctcaggtttgaggggcctcatggtcagcctgtggggccacat
gttcaggcaggtgggagtggtctcaggtttgaagggccacatatccagccaggagttggt
cctagatttgagggaccttcagttcagactgggggtggacttaggtttgaaggtcctcta
ggtcaaactggtccaagatttgatggctgccattcgtccagatttgatggtcaacctggc
cagctgtctctcttgcaaagatttgaaggattacatggacaacctggcccacgatttgaa
agggcaccaggtcagcaaactcctcctcggtttgagggactgcctggtcaacaggcacga
tttgatacagcgatacctcaaagatttgatggccctcaacaccagcaggcttcaaggttt
gacatgcctcttggtctccaaggtccaaggtttgaaaatgtagcaaatcatcctgcctcc
agactagaaacatcaccttatgggcaaactggtccatacagtgaacatcccaatcagact
tacaatggaccatcccatggtatgcaattccagagacctgaaatgtttgatggctctcaa
ggaccaaattttaatgggccagttggccctacagcacagaactaccccagtctgctcaac
agagcatctggacattactttgatgacaagaatcttcggggtcctcaatatggaaacttc
agtaatatgcccaattcaatgtcagtaggaaatgctcagcaaccacatcaggttcctgtt
ctgtctgtaccttctggtcaacctgtaccatatggtcaaggtcaacagtatttaccagta
cgtggacaaaatcctggaggttttcttccaaatcaagcagataatcaccttggtcagctt
gatgtaaatgagttattctctaaactggtttctacaggaatcctcaaattgtcaaaaact
gattccacttcagcacaagcaaatgaaactgttccgcagccagctcctgaggaggaggag
gatgaccaagaccagagcgaagatcaagatgtcccagaccttactaacttcacagttgaa
gaattgaaacagcgttatgatagcgtcataaatcgactatacactggcattcagtgttat
tcttgtggaatgaggttcaccacttcacaaacagatgtttatgcagatcatttagactgg
cattatcgacaaaatcgcaccgaaaaagatgttagtagaaaggttactcacagaaggtgg
tactacagtttaacagattggatagaatttgaagaaatagctgatctggaggagcgcgca
aagagccagttttttgaaaaagcacatgaagaagttgtgttgaaaacacaagaagctgct
aaagagaaagagtttcagagtgtacctgctggaccagctggagcagatgagagctgtgaa
atttgtcaagagcaatttgaacaatattgggatgaggaagaagaagaatggcatctaaag
aatgccattagagtagatgaaaagatttaccatccatcatgttatgaagattaccagaat
acatcgtcatttgattgcacgccatctcccagcaagaccccggtagaaaatccattaaat
attatgttgaacattgtcaaacaagaaacagaagagccagcctgtaacagccctacagtt
acagaaccaccagtggacacacctgctgcctgtacggaagagagcacacctgcatctaca
gatattaaaacagagcctgaagaggttgaatcagtttaa
DBGET
integrated database retrieval system
