Crocodylus porosus (Australian saltwater crocodile): 109309924
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Entry
109309924 CDS
T07440
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
109309924 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpoo01009
]
109309924 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cpoo04515
]
109309924 (PCDH1)
Protein phosphatases and associated proteins [BR:
cpoo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109309924 (PCDH1)
Cell adhesion molecules [BR:
cpoo04515
]
Cadherins
Protocadherins
109309924 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
K319L-like_PKD
Mid2
MLANA
Syndecan
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
109309924
NCBI-ProteinID:
XP_019390369
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MEKPEERRARGSRGAQRCPRPIPLWCRMKQLASCLGLWVLLQFPASSSGTRVVYKVQEEQ
PPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRENLRECQHQFP
GDPCFLEFEVSITDLIMNSSPRLLEGQIEVLDVNDNTPNFASPVITLAIPENTNIGALFP
IPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGANAEIDYSFHQATDMVRRLLRLDRATGLITVQGPIDREDVNILKFSVLAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVVDVNDNAPVFSQSFTEVAFPENNDLDDLVMEVSASDADSGSNAKLVYSLVMD
PSSKGIFSIDPDSGEIRVKTVLDREQRERYEFLVVAADKGSPSLKGTASVAINVMDKNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGDNARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDAGDPPRSAYVGVTINVLDENDNAPFITSPSNASYKHILP
HTSPGQQVSKVKAEDIDSGVNAELIYSITGGNPFELFQISPSSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTVLETLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVILVRYCRQREAKSGYQAGKKETKDLYAPKQGNKSSKS
KNKVKKSKSPKPPKPAEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQVGELFLSPVAAPPLHRGAIWTEVWE
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcccgaggagcgccgcgctaggggcagccgcggagcacagcgctgtccgcgc
ccaatccccctgtggtgcagaatgaagcagttggcatcatgccttggcctatgggtcctc
cttcagttccctgcctcaagttctgggacacgtgtggtctacaaggtacaggaggagcaa
cccccgaacacactcattgggagcctggctgctgactatggctttccagatgtggggcat
ctttataagctggaagtgggggccccctatctgcgtgtggatggcaaaacgggggacatt
tacaccactgaaacttccatagaccgggagaacctacgtgagtgccagcatcagttccca
ggggatccttgcttcctggagtttgaggtgtccatcacagatttgataatgaacagcagt
ccacgccttctagagggtcagattgaggtactggatgtcaatgacaacacaccaaacttt
gcctcgcctgttatcacactggccatccccgagaacaccaacattggggctctctttccc
atcccactggccatggaccgtgactcaggccccaatggtgtggcctcctatgagctcatg
gcagggcctgaagcacaggagctctttgggctacaagtggccgaggatcaggatgagaag
cagccacagctaattgtcatggggaacctggatcgagagcagtgggactcgtatgacctg
accatcaaagtgcaagatgggggaaaccctccacgggcaagcagtgcccttctgcgcatc
actatcctggacatgaatgacaatgcacccaagtttgaaaaggccttgtatgaagcagag
ctctcagaaaacagtcctgttgggcattctgtccttcaggtgaaagccaatgactcggat
cagggcgccaatgccgaaattgactattcctttcaccaggccacagacatggtacgccgc
ttgctacgcctggatagagccacaggcctcatcactgtacaggggcccattgatcgggag
gatgttaacatcctcaagttctctgtcctggcaaaggataaaggggctaatcccaagagt
gcccgtactcaggtagtggtgaccataaaggatatgaatgataatgccccctccattgag
atccgaggcattggtcttgtcacccaccaggacggcatggcaaacatttctgaggatgta
cctgtggagacggctgtggccctggtgcaagtgtctgaccgggatgaaggagaaaatgct
gtggttacctgtgtggttgccggtgatgttccattccagctgcgacaggccagtgagacg
ggcagtgacagcaagaagaagtacttcttgcaaaccaccacaccactggactatgagtca
gtgaaggagtacaccattgagattgtggctgtggactcaggaaacccacccctttccagc
actaactcccttaaagtgcaggtggtggatgtaaatgataatgcccctgtctttagccag
agcttcactgaagtggccttccctgaaaacaatgaccttgatgacctagtgatggaggtg
agtgccagtgatgctgatagtggctctaatgccaagcttgtttactcattggtgatggat
ccttcctccaagggtattttttctattgatcctgattctggtgaaatccgagtgaagacg
gtgctggaccgggagcagagggagcgctatgaattcctggtggtggcagctgacaagggc
agccccagcctcaagggtacagcatctgtggccattaatgtcatggacaaaaatgacaat
gaccccaagttcatgttaagtggctacaacttctcagtgatggagaacatgccacctttg
agcccagtaggtatggtgacagtgattgatgccgacaagggtgacaatgcccgcatccaa
ctttcagtagaacaagacaatggggactttgtgatccagaatggcactggcaccatcctc
tccagtatttcttttgaccgggagcaacagagcacatacaccttccggctcaaggctgtg
gatgcaggggaccctcccagatctgcctatgtgggagtgaccatcaatgtactggatgag
aacgacaatgccccttttatcacctccccttccaatgcctcttataaacacatcctgccc
cacaccagccctgggcaacaggtcagcaaggtcaaggctgaagacattgattctggggtc
aatgcagagctgatctatagcattactgggggcaacccttttgagctcttccagatttca
cctagcagtggggatatcacactggagaaagagatcttgcgcaagcatcatggcctgcac
cgcctagttgtgcgtgtcaatgacaagggcaagccctcacgccatggaactgcactagtg
cacttttatgtcaatgagaccctagctaatcgcactgtgctggagaccttagtggggcac
agcctggacacacccctggacatagacattgctggggatcctgaatatgagcgcagcaag
caacgcagcaacatcctctttggagtcattgctggcattgtggctgtaacgcttgtcatt
gtgctggtcattcttgtgcgctattgtcggcagcgggaggccaagagtggttaccaagca
ggcaaaaaagaaaccaaggacttgtatgcacctaaacagggcaacaagagcagcaagagc
aagaacaaagtgaagaagagcaagtctcccaagccacccaagccagcagaggatgaagag
gagacggggctgcaaaaatccctcaagttcaacctcatgaatgactctgtaagtgacagc
ccccggatccatctacccctcaactatccacctgggagcccggacctggggcgccactac
cgctccaattcaccgctgccctccatccagctgcagcctcagtctccatctgcttccaaa
aaacaccaagtggtacaggatctgcctgctacaaacacctttgttggcactggggacaat
aactcaacaggctctgaacaatactcagactacagctaccgcaccaatccccagaaatat
accaacaagcaggtaggagagctcttcctgagcccagtagctgcacctcctctgcacagg
ggtgccatctggacagaggtgtgggaataa
DBGET
integrated database retrieval system
