Crocodylus porosus (Australian saltwater crocodile): 109310415
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Entry
109310415 CDS
T07440
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109310415 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109310415 (EDC4)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109310415 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
109310415 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WDR55
Uteroglobin
PIN_8
ApoLp-III
Motif
Other DBs
NCBI-GeneID:
109310415
NCBI-ProteinID:
XP_019391069
Ensembl:
ENSCPRG00005015510
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPITTGDGASLA
KSMHRSVPLGTLQEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNSYLAYAIRGATNGSAMVRVLSVSTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNLFVWRLAMVNGKIQEEILVNIKRPDGTPLNNFRRIIWCPFIP
DENEESSEEGSQILALLHEDRAEVWDLDIIRANDSSWPVEVTNIKEGFIVVKGHSTRLSE
GALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGKPLSCLLFCDNHKKQDP
EVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSSDIFSSMSILPSLKVCLDLSAEYLI
LSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAEE
ENDSLSVEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMAASIPSHGSHE
DFAFPDHLADLGTEGLGSEKGSIHGSQSDLRRISDLPVPADFLSLSNDAKPKLMTPDAFM
TPSTSLQQITVSPGSSVSSLTAVTAMSSTSVNDAAMSSHRPSEDLTLNPKMQLDTSITLS
SSGSSLQTSPRNHSVLIPGLPDKLTAKAPVPVAPGNPPLSLELKEVEPLVVPQASPTRER
SPDVISSASTAMSQDIPEIASETLQRSFAAAPTGLPAEVLEANHHADSMASAASALHLLS
PRNRHNSEHSHHSLDMAPVEVDRLNTPSLLETALTQENASSDSVVSQPWPAAPDITRETR
NSMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKV
SAQRLPVKDWKTKASPRASPKLKRKGKKEDGDVTQSPRSSDHQVTSEYQDELMSLLRNQQ
RELAELRQNQMELMRRLTDHLDAVQSSLMGHVERVIGSQQEQEQRRLDRALTEWQQRNEQ
LQEHLSQQLSQSMSTAVCSRLERTVREEMKKTVPQCISKSMDPVTGQLSNTIATKLTAVE
GTLKENVTKLVKSKNLTDTIARAAADALQGPIQSAYREAFQSIVLPAFEKSCQSMFQQIN
DTFKQGTQEYIQQLETHMKNKKVREQEARDPLLSQLRQLITTFQSTTEQLASTITASVHA
EVQHQLHIIVGNMQESILTQVQRVIKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPIPSAH
LDFQSQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVL
LSLIQQLSSDLGTRTELKLSYLEEAVMHLDHSDPITRDHMGSVMSQVRQKLFQFLQAEPH
NSLGKAARRLMIMLQGLVTPSMT
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccagcatcgacatcgaggacgcgacccaacacctgcgcgacatcctcaag
ctggaccggcccggaggttcagtgaatgaaaatcagcgaccatccaattcatacaatggg
gacctgaacgggctgctggtgccagaccccatcacaactggagatggagcttcattggct
aagtcaatgcaccgcagtgttcctctgggaaccctgcaggagaagcaagtcatctgcctt
tctggagatgacagctctacctgcctcgtgatatcagcaaaagatgtggagatagtagcc
agtagtgattctagcatcaccagtaaggccagagggagcaacaaggtaaaaatccaacca
gttgccagatatgattgggagcagaaatactactatggaaacctgatagcagtctcaaac
tcttacctggcatatgccatccgaggtgccactaatggctccgccatggtgcgtgtgctg
agtgtcagcacagctgagcgaaccttgctgaaaggattcacgggtggtgtggcagacttg
gctttcgcccatctcaactccaaccagctagcctgcctggatgaggctggcaacctcttt
gtctggcgcctagccatggttaatgggaaaatccaagaggagatcctggtgaacattaaa
cgacctgacggtaccccgttgaacaactttcggaggatcatatggtgccccttcattcca
gatgagaatgaggagagcagtgaagaggggagccaaatactggcgctgctgcatgaggac
agggcagaggtttgggatctggacataatccgagccaatgatagctcttggccggtggag
gtcaccaacatcaaagagggcttcattgtggtgaaaggccatagcacgcgtctaagtgag
ggagcgctgtctccagatggaacagtcttggccacagcaagtcatgatggctatgtcaaa
ttctggcagatctacattgaaggacaggatgagccaagatgcctccatgaatggaagcct
catgatgggaagcctctttcctgcctgctcttctgtgacaatcataaaaaacaagaccca
gaggttcctttctggagatttctcatcacaggtgcagatcagaatcgggaactgaagatg
tggtgcactgtgtcttggacctgtctgcagactgtccggttttcctctgatatcttcagt
tccatgagcattcttccaagtttgaaggtctgcctggatctctctgctgaatacctgata
ctgagtgatgtgcagagaaaagtcttgtatgtgatggagctgatgcagaaccaggaagaa
ggtaaagcctacttcagctccatttcagagttcctcctcacccacccagtcctgagcttt
ggcatccaggcagtgagtcgctgccggctaagacacactgaggtccttccagctgaagag
gaaaatgactcccttagtgtagaaggggctcagggtgctggggctgttgaatctgcagca
ggcgtgctgatcaagctcttctgtgtccacaccaaggcccttcaggatgtacagatccga
ttccagcctcttcatagcccagatatggctgcatcaataccctcccatggctcccatgaa
gattttgcatttccagaccacttggctgacctgggcacggaagggctgggatcagagaag
ggatccatacatggttcccagtctgacttacggcgcatttcagacctacctgtgcctgca
gacttcctctctctctcaaatgatgccaaacccaagctaatgaccccagatgcattcatg
accccgagcacatctcttcagcagatcaccgtgtcacctggtagcagcgttagttccctg
actgcagtcacagccatgagcagtacttctgtcaatgatgctgccatgtccagccacagg
ccatctgaagacctgaccttgaacccaaagatgcagttggataccagtatcacactgagc
agcagtggtagcagcctccagaccagtcccagaaaccattctgttcttatccctggactc
cctgacaaactgaccgccaaggcacctgtcccggttgcacctggaaacccacctctctct
ctagagctgaaggaagtggagccccttgtggtaccccaggcttctcccacccgtgaacgc
tccccagatgtaatttcttcagcctccactgctatgtctcaagatatcccagagattgcc
tcggagaccctgcagcgcagctttgcagcagccccaactgggctccctgcagaggtactg
gaggccaaccaccatgcagacagcatggcatcagctgcttcggccttgcacttgctgtct
ccaagaaacaggcacaattccgagcacagtcaccactccctggacatggcccctgtggag
gtggacagactgaacactccctcattgctggagactgctttaactcaggaaaatgcttct
tctgacagtgttgtgagccagccatggccagcagctcctgacatcaccagagaaaccagg
aacagcatggcagacagccctagggacgaggttgaagagaagcacaagagctcttcgtat
cacagacacagctaccacctgttgcagcatgacagccaggatgccagtgcagagcaaagt
gaccatgatgatgaagttgcaagtttggcttctacatcaggtggatttggtgccaaagta
tctgcacagaggctgcctgtgaaggactggaaaaccaaggcatcccctcgggcttcccca
aagctaaagcggaagggcaagaaagaggacggggatgtgacccagtccccccgatcatct
gatcaccaggtgacttccgagtatcaggatgagctgatgtctctgctgagaaaccaacag
agagagctcgccgagctacggcagaaccagatggagctgatgcggagactgactgatcac
ctggacgctgtgcagagctccctcatgggccatgtggagagagtaattggctctcagcaa
gagcaggagcagaggaggctagaccgagctctgacagaatggcagcagcggaatgagcag
ttacaggagcacctgtcccagcagctctctcagtccatgtccaccgctgtctgtagtcgc
ctggagaggactgttcgtgaagagatgaagaagacagtgccccaatgtatttccaaaagc
atggaccctgtcactggacagctgagtaacaccattgcaaccaaactcacagctgtcgag
ggcacattgaaggagaatgtcactaagttggtgaaatcaaagaaccttacagataccatt
gcgagggcagctgcggatgccctgcagggacccatccagtcagcctacagagaggcgttc
cagagcatcgtgctgcctgcatttgagaagagctgccagtccatgttccagcagatcaat
gacacgttcaagcagggcacacaggaatatattcaacagctggagacccacatgaagaac
aaaaaggtgcgagaacaggaggcacgggaccccctactgagccagctccgacagctgatc
accaccttccagagcaccacagaacagctggcttccaccatcacggccagtgtccatgct
gaagtgcagcatcagctgcatatcatcgtgggcaacatgcaggagtccattctgacccag
gtgcagcgagtcatcaagggggaggtgagcctggccatgaaggaacagcaagcagctgtc
acctcaagcatcatgcaggcaatgcgctcagcggcaggcacgcccatcccctctgctcac
ctggacttccagtctcagcaggctcacatcctgcagctgctgcaacagggccacctcaac
caagctttccagcaggctctcactgcagctgatctgaatctggtcctgtatgtttgtgag
actgtggatccacagcaagtttttgggcagcatccatgtccactgtcccagcctgtcctc
ctctctctcattcagcagctctcttcagatttgggtacccggactgaactgaaactgagt
tacctggaggaggcagtgatgcacctggatcacagcgaccccatcactcgagaccacatg
ggctctgtcatgagccaggtgcggcagaagctcttccaattcctgcaggcggagccccac
aacagcctgggcaaggctgcccgccgcctcatgataatgcttcagggcttggttacaccc
agcatgacctaa
DBGET
integrated database retrieval system
