Crocodylus porosus (Australian saltwater crocodile): 109313584
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Entry
109313584 CDS
T07440
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03013
Nucleocytoplasmic transport
cpoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109313584 (UPF3B)
03015 mRNA surveillance pathway
109313584 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109313584 (UPF3B)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109313584 (UPF3B)
mRNA cycle factors
P-body specific factors
109313584 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
109313584
NCBI-ProteinID:
XP_019395753
Ensembl:
ENSCPRG00005005908
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MKEDKENTRPKEKRGALAPPAAPPPAPDAERPKEKKETLSKVVIRRLPPSLTKEQLEEHL
QPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIV
EFAPFQKAAKKKSKKKDAKTGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKE
LIAKRTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKLK
KVERFPEKERDKSKDEPKIKLLKKPERDERDLERKEKSKKLEKEREEKNIATLSTASAKR
SDGEAKEEKAKKSEDECGKDYRDRDRDLERDREKLRRQDDDRRRQKERFDREKVFRRKEE
EVKKERDSFREKGKKSDLMDFASNPDKFERATKDDKKEDPIKRDRIRNKDRPAMQLYQPG
ARSRSRLCQYEDGAAKPSDQGTDKKQESETSNTKEE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacaccaggcctaaggagaagcgtggggcccttgcgccgccc
gccgcgccgccccctgcgcccgacgccgagcggcccaaggagaagaaggagacgctcagc
aaggttgtaattcggcgcttgcctcccagtctgaccaaggagcagctcgaggaacatctt
cagcctctgcctgaacatgactattttgaattctttgccaatgattccagtttgtatcct
cacatgttttcccgagcatacatcaactttaaaaaccaagaagacatagtactattcagg
gatcgttttgacggttatgtttttgttgatcacaaaggtcaggaatatgctgccatagtg
gaatttgcaccattccaaaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaact
gggactattgacgatgacccagagtataagaagtttttggaaagttacagtgcagatgat
gaaaaattaacatctactcctgaaacgctactggaggaaatagaagcaagaaacaaagag
ctaatagctaaaagaacaactcctcttctgaacttcttgaaaaataagcagagactgaga
gaagaaaagagagaggagaggagaaggagagaactggaaagaaaaagacaaagagaagaa
gaaagaagaaagtggaaagaggaggagagaaggaaaagaaaagaagcagagaaattgaag
aaagtagaaagatttccagagaaagaaagggacaaatcaaaagatgaaccaaagattaag
ctacttaaaaagccggagagagatgaacgcgatttggagagaaaggaaaagtccaagaaa
ctggaaaaagagagggaggaaaaaaacatcgctaccctaagtactgcatcagccaaacga
tctgacggagaggcaaaagaggaaaaggcaaaaaagtccgaagatgagtgtggaaaagac
tacagggaccgggatagagaccttgagagagaccgagaaaaactgaggcgccaagatgat
gaccgccgcagacagaaagagcgctttgatagagagaaggttttcagaagaaaagaggaa
gaggtgaagaaggagagagactcgttcagagagaaaggaaagaaaagtgatcttatggac
tttgcaagtaatcccgataaatttgagagagcaaccaaagatgacaaaaaggaggatcca
attaagagagatcggatcagaaacaaggatcgtccagcaatgcagctataccagccagga
gcccgaagccgaagtcgactttgtcagtatgaagacggtgctgcaaaaccttcagatcag
ggaacagataaaaaacaggaaagcgagaccagtaacacaaaagaggagtga
DBGET
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