Crocodylus porosus (Australian saltwater crocodile): 109313913
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Entry
109313913 CDS
T07440
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109313913 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109313913 (NUP188)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109313913 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
109313913
NCBI-ProteinID:
XP_019396286
Ensembl:
ENSCPRG00005002660
LinkDB
All DBs
Position
Unknown
AA seq
1738 aa
AA seq
DB search
MAAGGLCARSSRELWTILLGRSALRETAQIAAELNKHWQRLLEGLSYYKSPSSSSAEKVK
ADKDVAAPLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERICILRCVLHLLTYFQDERHPYMAQYSQCIEKLEKELVPNYRKQFEELYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPDELLAFARMFRDQ
GFGSRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERALDDRTEEHKLADNGHV
HQQEMDRLLLTLGDVSHHAPVLLAWALLRHTISPEESTSIIRRMGSTAIQLNVFQYLTKL
LRSLSSGGKNCTASTACMCIYGLLSFVLTSLELRTLGNQQDIIDAACEVLAASSIPQLFW
RTEPTAGLGIILDSVCGMFPHHLSPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKNK
PPDVISHEDGTLWRKQAPKLLYPLGLGQTNLRIPQGTVGQVILEDRGYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPVIDLVHKVISTDVSVADCLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLASRMPAKVWTDLHHTGFLPFVANPVSSMSRMISAEGMNA
GGYGNLLMSIEQPQGEYCVTISFLHLITTLVRGQLGSTQSQGLMPCIVFVLKEMLPNYHK
WRYNSHGVRERIGCLILQLIHAILNLCPEMDPHSNSAPSLQSLCIFSLANTEAGQAVINI
MGIGVDTIDMVMASQSSSDESLGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALT
QHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFL
TRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGDDGSKEFSLGEWSCLQVV
LELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGILA
PPSETSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLRKFSIEKRFAYWSGYVKSL
AHHVAETEGTSCASLTEYQMLISAWRMLLIISTSHADIMHLTDSAVHQQLFLDVLSGTKA
LLLVPMSVSCLQLGSMLCTLLLILLRQWKSELNSVDKIINSLTQILEGVLQADQQMMEKT
KARVFSALITVLQMKEMKVSEIPQYSQLVMSVCETIQDEVIALFDQTRHNLTSGDSADDK
DSMETDDVSRVKHKDQRDGICVLGLYLAKELCEIDEDGDYWLQVTRKVPVLPTTFTALEI
SLRVKQNLHFTEASLHLLFTLARTQQGAAAVAGAGVTQSVCLPLLSVYQLSSNGTIQTPA
SSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQN
LACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYL
QTKNGDSLPSGVTPRVQRTSQTSSRHPNPESEAAEQKALRTVQYSLLKILSKSLAALRHF
TPDLCQILLDQSLDLAEYNVLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGELDKKK
EPFPQAVGLNTQEGTKTLKSLLMFTMENCFYLLISQAVRYLKDPAVHPRDKQRMKQELSS
ELSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKFGPEGQEPLIQLVQAFVRHVQR
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcgggttgtgcgcgaggagtagcagagaactgtggaccattctgctgggc
agatcggctttgagggaaacagctcagattgcagcagagttgaacaaacattggcagagg
ctactagaggggctctcatactacaagtctcccagttcaagttcagcagaaaaagtaaaa
gctgacaaagatgtggctgctccgttgaaggaactaggcttaagggtcagcaagttcttg
ggtctggatgaagaacagagtgtacagttgctacagtgttatcttcaggaggattacaga
ggcaccagggactcactgaagactgttctgcaggatgaaagacagagtcaggctctgatg
ttgaagctggctgactattactatgaagaaaggatttgcattctgcgctgtgtcctccac
ctccttacgtattttcaggatgagaggcacccctacatggcacaatactcccagtgtatt
gaaaagttggaaaaggaactggttcctaattacaggaaacagtttgaagagctgtacaaa
gcagaagctcctacttgggaaacacatggaaatctcatgacagagcgccaggtatcccgc
tggtttgtgcagtgcctccgtgagcaatccatgcttttggaagtcatctttctttattat
gcttactttgagatggcacctgatgaactgttggcatttgccaggatgttcagagatcag
ggatttggctctagacagaccaataggcacttggtagatgaaagcatggatcatctggtg
gatcgtattggctacttcagtgctcttattcttgtggagggcatggaaattgactccctg
catgaacgtgctttggatgatagaacagaagaacataagttagccgataatgggcacgtt
caccagcaggaaatggaccgtctgttgctgacattaggggatgtttcgcatcatgcccct
gttctcttggcctgggctttgcttcgccatacaataagcccagaagagtcaacaagtata
atcaggcgaatggggagtactgcaattcagcttaacgtgttccagtatctgaccaaactt
ctccgatcactaagcagtggggggaagaattgtactgccagcactgcttgcatgtgcatt
tatgggctgctttcctttgtcttgacctcactggagttacgtactctaggcaatcagcag
gatataattgatgctgcgtgtgaagttctagcagcttccagcattccccagctcttctgg
aggacagagccaactgcaggtcttggcattatcctggacagtgtgtgtggaatgttcccc
catcacctctctcctctccttcagctactccaagcccttgtgtcagataaatctactgca
aaaaaggtgtatagcttcctggataaaatgtcattctacattgagttgtacaagaacaaa
ccccctgatgtgatttcacatgaagatggcaccctttggcgaaagcaggcaccaaagctc
ctctatcctctggggctgggtcagacaaacttacgaatacctcagggaacagtgggccaa
gtaattctggaagaccgggggtacctggtacgatgggaatattcctacagcagctggaca
ttgttcacttgcgagattgagatgctgcttcacgttgtatcaactgcagatgtgattcag
cattgccagagggtcaagccagtcattgacctggtacacaaggtcatcagcactgatgtg
tcagtagcggactgtcttctcccaatcacatcacggatctacatgctgttgcaaaggtta
acaactgtgatctctccccctgtggatgttattgcatcttgtgtcaactgtttgactgta
cttgcttctcggatgccagccaaggtttggactgaccttcaccatacagggttcttacca
tttgttgctaatccagtttccagtatgagtcgcatgattagtgctgagggaatgaatgca
ggaggttatggcaacctgttgatgagtatagaacagcctcagggcgagtactgtgtcacc
atctcctttctacacttgatcactactcttgtccgtggacagcttggcagcacacagagc
caagggctgatgccatgtatcgtgtttgtattgaaggaaatgctgccaaactaccacaaa
tggcgctataactcccatggagtgagagagcgaattgggtgtctgatcctgcagctgatc
catgctattttgaacctgtgccctgaaatggatcctcatagcaacagtgcccccagcctt
cagtctttatgcattttcagcctggctaacacagaagcagggcaggctgtcattaacatc
atgggcattggtgtggacaccattgatatggtaatggcctcacagtccagtagcgatgag
tcactgggccagggccagctgctgatccagacggttaagttggcgttctcagtcactaat
aatgtcatccggttgaaacctccttctagtgtggtatccccacttgaacaggctctcaca
cagcatggtgctcatgggaacaatttgattgctgtcttggccaaatacatctaccacaag
catgacccagcactaccacgccttgccatccagctgcttaaacgactggctacagttgct
cctatgtctgtgtatgcctgccttggcagtgatgctgctgctatccgtgatgctttcctg
actcgtcttcagagtaagattgaggacatgcgcattaaagtcatgatcttggaattcctc
acagttgctgtagagacgcaacctgggcttattgagttgttcctgaacctggaagtgaaa
gatggggatgatgggtcaaaggaattcagcttgggggaatggagttgcctccaggtggtc
ctggagctgatagactctaagcagcaggaaagatattggtgccctcccctcttgcaccgt
gcggccattgcgttcctacatgctttgtggcaggaccgtcgggatagtgctatgcttgtt
ctgcggaccaagcccaagttttgggaaaacttaaccaaccccctgtttgggatccttgct
cccccttcagaaacatcagagctcagtgtcttggacacctgtgccttaatcatgaaaatc
atctgcctggagatctactatgtagtcaagggctcactggaccagtccctaaaagatacc
ttgaggaaattctctatcgaaaagcgctttgcttactggtcaggatatgtgaagtcactg
gcacatcatgtggcagagacagagggtaccagctgtgcctccctgacagaatatcaaatg
ctgatttcagcctggcggatgctgctgatcatctctactagtcacgcagatataatgcat
ctgactgattctgcagtccatcagcagctgtttctggatgtgctaagtggaaccaaggct
ttactgctggttcccatgtcagtatcctgcctgcagctgggatctatgctatgcaccctt
cttctgattctgctcagacagtggaaaagtgaattgaattctgtggataaaatcataaac
tccttgacgcagattttggagggagtattgcaggcggatcagcagatgatggagaagacc
aaggccagagtgttctctgctctcatcactgtcctgcagatgaaagagatgaaagtgagt
gagatcccacagtactcccagttggtgatgagtgtgtgtgagacaatccaggatgaagta
attgcgctgtttgatcagacgaggcacaacttgacttctggagactcagcagatgacaag
gacagcatggaaacagatgatgtctcccgagttaaacacaaggaccagcgagatgggatc
tgtgttctggggctgtatctggcaaaggaactctgtgaaatagatgaagatggagattac
tggctgcaagttactagaaaggtccctgtacttcccactactttcacagccttggaaatc
agcctgagagtcaaacagaaccttcatttcacggaggcctcattgcatctactctttacc
ttagccaggacacaacagggagctgcagctgtggctggagcaggtgtcacgcagagtgtc
tgcctgcccctcctaagtgtatatcagcttagcagtaatggaacaattcagactcctgcc
tcatcccggaaatctctggatgccccctcttggcctggggtctatcgtctctctatgtca
ttgatggagcgccttctgaagacgcttcggtacaacttcctgacagaagcactggacttt
gtgggtgtccatcaagagaggattctccaatgcctgaatgcagtacggactgtgcagaac
ttggcctgtctggaagaagctgatcacactgttggcttcattcttcagctctccaatttt
atgaaagagtggcatttccacctgccacagctcatgagggacatgcaggtgaacttgtgt
tacctgtgccaagcctgtacttcccttctgcatagccgcaaaatgcttcagcactatcta
cagacaaaaaatggggactcccttccctcaggtgtgacacctcgagtgcagcgtacctct
cagacctcctccaggcatccaaaccctgaatcagaggctgcagagcagaaggccctgcgc
acagtgcagtacagtctcctgaaaatccttagcaaatccctggctgccctgcgccacttc
actcctgacctctgccagatcctccttgatcagtcactggaccttgctgagtacaatgtg
ctctttgttctgagtttcaccacaccagcctttgattcagatgtcgctccctcctttggg
accctcctggccacagtcaacgtggctcttaacatgctgggagagctggataagaagaag
gagcccttccctcaagctgtagggctgaatacacaagaggggacaaaaactcttaagtcc
ctgctcatgtttacaatggaaaactgtttctacctgctcatctcccaggctgttcggtac
ttgaaggatccagctgtgcatccacgagacaagcagcgaatgaagcaggagctcagttca
gagctgagtacacttctctccagcctgtctcgttacttccgccgtggtggtccctcttct
cctgccagcggggtccttccttccccccagggaaagtctgcctccaagtttggtcctgag
gggcaggagcctttgatccaactggtgcaagcctttgtcagacatgtgcagagatag
DBGET
integrated database retrieval system
