Crocodylus porosus (Australian saltwater crocodile): 109314127
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Entry
109314127 CDS
T07440
Symbol
SETX
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpoo03021
]
109314127 (SETX)
Enzymes [BR:
cpoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109314127 (SETX)
5.6.2.5 RNA 5'-3' helicase
109314127 (SETX)
Transcription machinery [BR:
cpoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109314127 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
AAA_16
UvrD-helicase
AAA_22
TniB
SLFN-g3_helicase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
109314127
NCBI-ProteinID:
XP_019396658
Ensembl:
ENSCPRG00005006521
LinkDB
All DBs
Position
Unknown
AA seq
2844 aa
AA seq
DB search
MSICRWCTPGASCTADFLSNYASKRLPPEDLAAASDDLCYCLECVVEYHKARDEVPSLHE
TLWELETSRLIAHMEKSMKEEIEEDDELFIVDENGETQLSGYTGPDFENNLRVPLLEILK
YPYLLLHKRIGELCVEALCKMEQANSSFQVFEKHPGIYLLLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYCSSVIEKGKLVLLPSHLYDSANYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKQTDDDNADPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINNVSYNNEIQNIRNSSRRPKTEPESEYGEDMVTCSQIVYN
YNTEKPKKDAGWKTAICPDYCPNMYEDMQTLANVLQSDIGQDMRVHNSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHHLCSEIKAVLNERVQQCDKVSEFFILILVSIIELHRNKKCLHLL
WISSQEWVEAIVKCSKLPNVAFMRHGEKTPAISSQSFNSVQYACVQLIRSLLREGYQIGQ
QTLCKQYLDKLNLLLRGNISLGWHLSSRETQELQTCLKQVIKSIKDKSTSSSFPLENSSI
CTTSSAVLMKQERGKSDDRCKMKTHPKDDFSPSFSSACRRDEVCPQSPSPRRGDASEEEY
KIPSAYNSYATTDCFLTNVKKELSGSAVEHEGQTSFVTTDKYRDIHNNENNPQVENYAKN
STLLNQVCSPDLHCSDRKSCGVLEANCKTGARLPACLTAQPCIISEVVCNSNEKDVSLSL
NACSSFKVDDNKLSNLKTSVQKGDLATKLLQLMKSSPHLKKNKANDAPNSGTDQPQSRPE
SMHAKEDRSKDLGVNVAREGEMPISCHTPKGPESQEGRCLNGIVEIKPLSAKQEKNNAQL
EFSSFFKKEVNLPKNEVGGDDDNHIPCTAIIGNLSKKISHAGRSSSLSKCLLNKDLNAES
SGQEQSNFGNLHPRQDACKEQIVSKLHVAEISVGVSIPPISSGEGGRPSNTPQISPHSIK
RESEDRPLTISRYFKREGVLERKNDESKEVIACDLANRISGSRTLTDSQLDRDLHKLSLA
AYTKGVNFSLDSSQEIEPQHCLPDIMRKVKGAVRSSSNGPSNETSFDADCPNNQVIIISD
SSSDDEKKIVIEKQTGKIDESICPEKQPLTSACVSDGVSKKEQMKSHSSPLPYEDYESQY
FEFETEDDVFSVWQDSQMDDKNVNQVREQMPSAGSCSSNNLELEDETNEWGYDTDYISDD
VIEQAAKDAEKQISSVFYQKKAGTAEIKSELTSQEPATKRNAADQVERSYTHLVAKRGTT
KTSLTELRTSTSKASLAKKLAVKKGSASPSKSLAKSKVARAACRSPRKMNLKTTQSKKLP
QASCKNTEPCRSTPAVVPPKKVRQCPKPTSTAEKLGLKKAPRKAFELSQRSLESMAELRN
YGRVAGAVTVPQKQKTILIDPRNLRVKNNKKMLASQDLQFLRQTRPKQEGRGKNRVGSSG
SRSKRIVKRADPTAAIQQPTAFDLASASRTSQRTSEQVGCLSTPDKIQMRKSCSSESEEV
QPVPMFKMPASAEPTSKTEGNNTAIPVLPYFPSPLTAEGKSEAAEKDCIVKATSLLPPQC
QEASLKENMFKLNENDDDDLFLTQSDPVDMEMCSQVENIIILPSKEPLEMEGNAAESLLQ
NEPSSIVMCKYKDCTEKVEKTGEFCSKHSLIDSSDHLFVKPLPPKIVKPPTTKIFSSNSS
SRSASLSKDLENSSKLSLVSKNKLNAVKPAASKPVNPKAVSSENRVFKTPSFNSILRPQN
SSNVLRAQNMQTKAVSNFQGWPAAQTCVGQEKRVSYFPQSNTLVTVQRDPTIFVKEVLKW
NYEIFANFGSFGPPNNLLQAIVASVPVKFQGYNDYFDTFFPLMMLNAFETLAQEWQESQK
VKEKNAYHLHLKKFSADLNQAEFTVYIRERDLVKQLHPKEEDLIFLVVREKQNPLAEESE
MDCHPVRHVGHVTRFSRTHFTERGQNEQRIVCHLFVQTRGNLSSYINQQVKCEVVSSLVT
TQRKFRGLLLLGRSPLAKAIIHPNYNDFCPRDLSTASERTTSYYKEYNEDQKKAIETAYA
MVKQHPGLPRICLIHGPPGTGKSKTIVGLLFRILNEKFGKENPAQNMNAKIKRNRVLVCA
PSNAAIDELMKKIILEFKEKCQNIKNPLGMNRSYSISTDVLRFSLDSQVSYRMNRGHSGR
DQDFHKRKEALDRQLDMLSRQRAMDRCEKREKSQKLDDEIGRLSKERQELASQLKEVRGR
PQEVQASIILESHIICCTLSTSGGFLLESAFRRQGLDPFSCLNIXKAGQACEVETLIPLI
HRCSKLVLVGDPKQLPPTVISMKAQDYGYDQSLMARLHKHLEEQVQQNIIGKLPVVQLTV
QYRMHPDICLFPSNYVYRKTLKTDRATEESRCSSDWPFQPYLVFDVADGHEKRDKDSFAN
PQEVKLVVELIKTIKEKRKDTGSRNIGIITPYNAQKKIIQQELDREFGKDRAGEVDTVDG
FQGRQKDCIIVTCVRANSAHGSIGFLASLQRLNVTITRAKLSLFILGRLKTLMENKDWNE
LIQDAQRRGAIIKTSYKTYKKDAAKILKFKPALPRPPPRCPSTALPEKTTQGQPCSGSDR
QVDVTNKKDSNSSRRQCDSAGPLAQDSGGLKRSQESQGSDARGVTGPTEARAAVQPAVQE
RQRDPRLAKRSEATGKEQAFKNGKPSPLRNPGMTSPRVSDASSAHRSQSSSVPPSVSKAD
TSTKSSQSERQPDLPVRSSHIARQDHDKNASVTMREAGTKSEGDQKNKTEGNKDRASLYA
QRRASERSPEDTGFSSAKRRKISS
NT seq
8535 nt
NT seq
+upstream
nt +downstream
nt
atgagcatatgtcgttggtgtacgcccggtgcttcctgcaccgctgacttcctgagcaac
tacgcttccaaacggttgccccctgaagatcttgcagcggccagcgatgatctctgttac
tgcctggagtgtgtggttgaataccacaaggcaagggatgaagtgccttccttgcatgag
acactgtgggagttggaaacctcccgtcttattgcccacatggagaagtccatgaaggaa
gaaattgaagaggacgatgaattgtttatagtagacgagaatggggaaacacagctgtct
ggttatactggcccagattttgagaacaacctgcgagtacctcttctggaaatactgaaa
tatccatatttgctgctacataagcgcatcggtgagctgtgtgttgaggctctctgtaaa
atggagcaagctaacagctcctttcaggtctttgagaaacatccggggatttatctactc
ttggtacaccccaatgaagtgattcgtcggtgggccatcctgacggcaagaaatttgggg
aaggttgacagggatgattactatgatttgcaagaagtgttaacttgtttgtttaaagtc
attgagctggggctttttgatagtcctgatatttattgttcttcagtgatagagaaagga
aagctcgttcttcttccatcccatttgtatgattctgccaactacaagaactactggtta
ggtatctgtatgctactaacggtgttggaagaacaagcgatggattctttgttgctgggc
cccgataagcagaatgatttcatgcagtctatacttcacaccatggagaaacaaacagat
gatgataatgctgatcccttctggccagcgctgcactgtttcatggtgattttggatcaa
ctgggttctaaagtgtggggtcaactgattgatccagtccaggcttttcaaactataatc
aacaatgtgagctacaacaacgaaatacaaaatatacgcaatagctctaggagacccaaa
actgaaccggagtcagagtacggggaggatatggttacttgtagccagattgtctataat
tacaacacggaaaagcccaaaaaggacgctgggtggaagactgccatttgtccagattat
tgccccaatatgtatgaagatatgcagacattggccaatgtgcttcagtctgatattggc
caagatatgcgagtccataacagtacatttttgtggttcatcccttttgttcaatcactt
atggatctcaaggacttgggagtagcctacattgtagaggtcattcaccatctctgctca
gaaatcaaagccgttctcaatgaaagagttcagcagtgtgacaaagtctctgaatttttc
atcctgattttagtgtcgattattgagctacatagaaataagaagtgtctgcatttgttg
tggatcagctcacaagagtgggtggaagcaatagtgaaatgttctaaactcccaaatgta
gcatttatgcggcatggtgaaaaaacaccagcaatatcctctcagtcttttaactcagtg
cagtatgcatgtgttcagttgatacgcagccttcttcgagaaggataccaaatagggcag
caaactctttgcaagcaatacctagacaaactaaatctgcttctccgtggaaacatttct
ctgggttggcacctgagcagccgggaaacccaagaattacaaacctgtttaaagcaggta
ataaaaagtataaaggacaaatccacaagttcttcattccctttggagaacagctcaatc
tgtacaacttcatctgctgttcttatgaagcaagagagggggaaatctgatgacagatgt
aaaatgaagacacatcccaaggatgacttcagcccatcattttcttcagcatgtaggaga
gatgaagtttgtccccagagtccttccccgagaagaggagatgcttcggaagaggaatat
aaaataccatctgcctacaattcctatgcaactaccgactgctttttgacaaatgttaaa
aaagaactcagtgggtcagctgtggagcatgaaggtcaaactagctttgtaacaacagac
aaatacagggatatccataataatgaaaataacccccaagtagagaactatgccaagaac
agtaccttacttaatcaggtgtgcagcccagatctccactgttctgatagaaaaagctgt
ggggtgttggaagccaattgtaaaacaggagccaggttgccagcgtgtctgactgctcag
ccttgtattatttctgaagtcgtttgcaactcaaatgaaaaagatgtcagtctctccctt
aatgcctgctcaagttttaaggtagatgacaataaactcagcaatttgaaaaccagtgta
cagaaaggtgatttggccacaaaattattgcagttaatgaagtcatcaccacatttgaag
aaaaacaaagcaaatgatgcgccaaattcaggaacagaccaaccacagtctcgtcctgag
agtatgcatgcaaaagaagatcgtagcaaagatctgggagtgaatgttgcgcgtgaaggt
gaaatgccaattagttgtcatactccaaaaggccctgaaagtcaggagggcagatgtctg
aatggtattgttgagatcaagcctctgtctgctaagcaagaaaaaaataatgcacaacta
gagttttcaagtttctttaaaaaagaggttaatttgcctaaaaatgaagtgggtggtgat
gatgataaccatattccatgtacagcgattataggtaacttgtcaaaaaaaatatcccat
gcaggaagatcaagttctttgtcaaagtgtctgttaaataaagacttgaatgcagagtct
tcaggccaagagcagtctaattttggcaatttacacccaaggcaagatgcctgcaaagaa
caaattgtgagcaaactacacgtggctgaaatttcagtgggtgttagtattccacctata
tctagtggtgaaggggggaggcctagtaacacccctcaaatcagtccacactcaattaag
agagaatcagaagacaggccactaacaatttccaggtattttaaaagagaaggggttttg
gagagaaaaaatgatgagagtaaagaagtgattgcatgtgatttagcgaataggatttct
gggtctaggaccttaacagactctcagctcgatagagaccttcacaaactatctttagct
gcctataccaaaggtgtcaacttttctcttgattcaagccaagaaattgaaccacagcat
tgtctgcctgacataatgaggaaagtaaaaggtgctgttagatcttcttctaatggccca
agtaatgagacctcattcgatgctgattgtcccaacaatcaagtcattatcatttcagat
tcatcttctgatgatgaaaaaaaaatagttattgagaagcaaactggaaaaatagatgag
agcatatgtccagaaaagcagcctttaacatctgcctgtgtttctgatggtgtgagcaag
aaagaacagatgaagagtcatagctccccattgccatacgaggattatgaatctcagtat
tttgaatttgaaactgaagatgatgtcttttcagtttggcaagattctcagatggatgac
aaaaatgtgaatcaagtccgcgagcagatgccttcagcaggcagctgttcttcaaataat
ttagagttggaagatgagacaaatgaatggggctatgatacagattacatcagcgatgat
gtcatcgaacaagcagccaaggatgctgaaaagcagataagttctgttttttatcagaag
aaagctggtacagctgaaataaaatccgagttaactagtcaggaacctgctacaaagaga
aatgcagcagatcaagtggagcgttcttacacacatcttgttgctaaacgtggtacaaca
aaaacaagcctgacagaactcagaacatctacatcaaaagcatcattagctaagaagctg
gctgttaaaaaaggcagtgcaagtccaagtaaaagtttagcaaaatccaaagtggcaaga
gcagcttgcaggagtcctagaaaaatgaatcttaaaactacacaaagcaaaaaattgcct
caggccagttgtaaaaatactgaaccctgcaggtcaactcctgctgtagttcctccaaag
aaagttcgccagtgtcctaaaccaacatcaactgcagaaaaacttggtttgaaaaaggca
ccccgcaaagcttttgagttatctcagcggtctttagagagtatggccgaactacgtaac
tatggcagagttgctggagcagttacggttccgcagaaacaaaaaactatattaattgat
ccccggaatcttcgtgtcaaaaataataaaaaaatgctggcgtcccaagatctgcagttt
ttaaggcagacgaggcccaaacaagagggcagagggaaaaatcgggttggaagttctggg
agtagaagcaaaagaatagttaaaagggcagacccgacggctgctatacagcaacctaca
gcttttgacttggcttctgcttcaagaaccagtcaaagaacatctgagcaagttggttgt
ctttctaccccggacaaaatacaaatgagaaaaagttgctcatctgagagtgaggaagtc
cagcctgtacctatgtttaaaatgcctgcttctgcagagcccacctctaaaacagaaggc
aacaatactgcaattcctgttttgccatattttccttcccctttaactgcagagggtaaa
agtgaagccgcagaaaaagactgcattgtcaaggccacttccctgttaccacctcagtgt
caggaggcaagtttaaaagagaacatgtttaaattgaatgaaaatgatgacgatgactta
tttttaactcagtcagatcctgtggatatggaaatgtgttcccaagtggaaaacattatt
atacttcctagtaaagagccactagagatggaaggaaatgctgctgaaagcctgttgcag
aatgagccttccagtattgtgatgtgtaagtacaaagactgtacagagaaggtggaaaaa
acaggggagttttgtagtaagcattctcttattgattcatcagatcatctctttgtcaag
cctctgccaccaaagattgtcaaacctcctactaccaaaattttcagctcaaactcttct
tcgcggagtgccagtctcagtaaggatcttgaaaatagttcaaaactttccctggtttca
aaaaacaaacttaatgcagtaaaacctgcagcatccaagccagtgaatccaaaagctgta
tcatcagagaatcgggtgttcaagaccccaagtttcaacagtattcttcggccccagaat
tccagcaatgttctccgggcccagaacatgcagactaaagctgtttcaaatttccagggt
tggcctgccgctcagacttgtgtagggcaagaaaaacgggtctcttacttcccacagtca
aatactcttgtcactgtgcagcgtgatcctactatttttgttaaagaagtcctgaaatgg
aattatgagatatttgccaactttggcagttttggacctccaaataaccttcttcaggca
atcgtggcatctgttcctgtcaagttccaaggatacaatgactattttgacacatttttc
cccttgatgatgctaaatgcctttgaaacgctggcacaagaatggcaagaaagtcagaag
gttaaagagaagaatgcttatcatttgcatttaaaaaagttctctgctgacttgaatcaa
gctgaatttacagtttacattcgggaaagggatctggtcaagcagcttcatccaaaggag
gaagatttgatttttctggttgtgcgtgaaaagcaaaaccccttggcagaggaaagtgag
atggattgccatcctgtgcgtcatgttggtcacgtgacccgcttctcccgtacccatttc
acagaacgaggtcaaaatgagcagcgtattgtttgtcatctttttgtccaaacacgaggc
aatttgtcatcctacataaatcagcaggtgaaatgtgaagtggtcagctctctagttact
acacaacgaaagttcagaggtctgctactgttgggtaggagtcctcttgctaaagccatc
atacatccaaattataatgacttctgtccaagagatttgagtactgcttctgagagaact
acatcatactataaagaatacaatgaagatcagaagaaagctattgaaactgcttatgcc
atggtgaagcagcacccaggccttcctagaatctgcctgattcatggaccacctggtaca
ggaaaatcaaaaactattgttggactcctgttccgtatcttaaatgagaagtttgggaag
gagaatccagctcaaaatatgaatgccaagatcaagcgaaatcgtgttctggtttgtgca
ccatccaatgctgctattgacgagctcatgaaaaagatcatccttgaattcaaagaaaaa
tgtcaaaatataaaaaatcctttgggtatgaacagatcgtattcaatcagcactgatgtc
ctgagatttagcttggatagtcaagttagctacagaatgaaccgggggcactctggccgt
gatcaagattttcacaagagaaaagaagctctggatcgtcagctggacatgctctctcgt
cagcgagccatggataggtgtgaaaagagggagaagagtcaaaagttggatgatgaaatt
ggcagactttcaaaagagaggcaagagcttgcttctcaactcaaggaggttcgaggccgt
ccacaggaagtgcaggctagcatcattttggagtcccacatcatctgctgcacattgagc
acaagtggaggttttctgctggagtctgcttttcgacgacagggacttgacccgttttct
tgtttgaacatatgaaaggcaggacaagcatgtgaggttgaaactctcattccactgata
catcgctgtagtaaacttgtccttgttggagatcccaagcaactccctcccactgtaata
tctatgaaagctcaggattatggctatgatcagtctttgatggctcgcctacacaaacat
ctggaagaacaggtgcagcaaaatattatagggaagctaccagttgtgcagctgactgta
caatacaggatgcatcctgacatctgcctcttcccatccaactatgtttataggaagact
ctgaagactgacagagcaacagaggagagccgatgttcttcagattggccatttcagccc
tacctggtctttgatgtagcagatgggcatgagaaacgggataaagattcttttgcaaat
ccccaggaagtgaagctggtggtggaattaattaaaacaataaaagaaaaaagaaaggat
actggttctcgtaacattggaataatcaccccttacaatgcacagaaaaagataattcaa
caagaattggacagagaatttggaaaagacagagccggagaagttgacacagtggacggg
ttccagggccgacagaaagactgcattatagtgacatgtgtccgagcgaacagtgcacac
gggtcaattgggtttctggcaagtcttcagcgtctgaatgttaccatcacccgagccaaa
ttgagcctctttatacttggaagattaaaaacactcatggaaaataaagactggaatgag
ctgatacaggatgctcagaggaggggtgccatcattaagacgagttacaagacctataag
aaagatgctgctaaaatcctaaagttcaagccagcattgccacggccacctccccgttgt
cccagtactgcactgcctgaaaagactactcaagggcagccttgttcaggcagtgatagg
caggttgatgtcaccaacaaaaaagacagcaacagttctaggagacagtgtgacagtgct
ggacccttggcacaagatagcggagggctcaaacggtcacaagaatctcagggttcagat
gccaggggtgtcactggacccacagaagcgagggctgcagtgcagcctgctgttcaagag
agacaacgggatccaagactggctaagagaagtgaagcaacagggaaggagcaggccttc
aagaatggtaagccctcacctctgagaaacccaggaatgacctcaccaagggtctctgat
gcatcttcagctcacaggagtcagagcagcagtgtaccaccctctgtctccaaggcagac
acttctaccaagtccagccagtctgagagacagccagacttgcctgtcaggtcttcccac
atagctaggcaggaccatgacaagaatgcttctgtgaccatgagagaggcaggaactaaa
agtgaaggagaccaaaaaaataagactgaggggaacaaagacagggccagcctctatgca
caaaggagagcatcggaacggtcaccagaggacacaggcttcagtagtgccaagcggaga
aagatctcctcttaa
DBGET
integrated database retrieval system
