Crocodylus porosus (Australian saltwater crocodile): 109315315
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Entry
109315315 CDS
T07440
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109315315 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpoo04131
]
109315315 (VPS8)
Membrane trafficking [BR:
cpoo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109315315 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
zf-RING_Vps41
TPR_VPS8_2
Clathrin
TPR_Vps41
WD40_CDC20-Fz
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Beta-prop_HPS5
WDR55
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
109315315
NCBI-ProteinID:
XP_019398493
Ensembl:
ENSCPRG00005009235
LinkDB
All DBs
Position
Unknown
AA seq
1416 aa
AA seq
DB search
MEKMADELKTETENLNPEHSMSSTGLEDDLGKLLGQETLLPKLGSIDLERELDAKSELID
DKEFNIPQVDTPPTLESILNETDDEEETFVLEDPSLLNIDNIDTHSYDTSSVASSDSGDR
AHMKRKKRLPDSFSLHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHG
LALIFGKDQNQALRLCLGSTGVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKL
LRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKG
EVCCIEPLHAKTELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPL
LAWHFVAVQNSVNPMLAFCRGDVVHFLLVKRDDSGAIHVTKQKQLHLHYDLINFTWMNSR
TVVLLDSVEKLHVIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSQALALVGEKAC
YQSISSCGSQIFYLGTKSVHVMTLRSWRERVDHLLKQDCLTEALALAWSFYEGKAKAVVG
LSGDVGKRKAVIADRMVEILLHYTDRTLKKCPDQGKIQVMEQHFQDMVPVIVEYCLLLQR
TDLLFSQVYDKMSENSVAKGVFLECLEPYILSGKLMGMTAQVMKDLLLHFQDRNLLENME
ACIVHMDITSLDIQQVVLLCWENHLYDAMIYVYNSGMNDFLSPMERLFKVIAPPLNAGKS
LTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQIFEFLIRLHSAEASTDEEV
YPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGC
LFTFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEE
NRLIQMAEKAEFYQICEFMYEREHRYDRIIDCYLRDPVRKEDVFNYIHNILSIPGYSTEE
KHSVWQKALEHMEELLLLSPGKAADLITTHFNDQLEGIINNLQDQFLLFQFLRSLLDPRE
GINQDLIHVSPCITEQFIELLCHYSPDQVLEMLQVLEFYRLEETIQITQKHQLHEASSYL
LEKKGDVHGAFLVMLEQLQSKLLMLTREDENSTQSHSIKDIEATLLKTIALCQRNSHNLN
QQQREALWFPLLEAMMSPQKLSSSSASCRYSEHLKILTMQVLNNMAAFIALPSILQRILQ
DPVYGKGKLGEIQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQ
DYCCICLQQYKRRQETADEIIVFSCGHLYHSLCLLSKECGLETQGLMRWTCYKCNSSSKG
GKLCESFSELKKGTSTSLAQASSESALDPQQIQAFDQLCRLYRGTSRLALLTELSRSRGG
ERPGPLSISQGDSALSSVFQNENFQLHLAPPPFTEE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagatggcagatgaattgaagacagagactgaaaacctcaatccagaacacagc
atgtcttccacaggactggaagatgaccttggcaagctcttgggtcaggagacacttctc
ccaaagttgggcagtattgatctggaaagagaactagatgccaaaagtgagctgattgat
gataaagagttcaatattcctcaagtggataccccaccgacgctggaaagcatattgaat
gagactgatgatgaagaagagacttttgtgctggaggatccctcgcttttgaacatagat
aatatcgacacacactcttacgacacgtcttcggtggcgagctctgacagtggagaccgg
gcacacatgaaaagaaagaaaaggctccctgattctttttctctccatggatcagtcata
cgactttctcttctgaaaggaatttctgcccaaatagtttctgctgcagacaaagtggat
gctggcttgcctactgccatagcagcatcaaatctgattgccgtggggacttctcatggg
ttggcattaatttttggaaaagatcagaaccaggctcttcggctttgtcttggcagcaca
ggtgttggtgctcagtacggggctatctcagctctcagtatcaataacgactgctcgaga
cttctgtgcggctttgcaaaaggacagatcactatgtgggatctggctagtgggaaactt
ctaagatcaataacagatgctcatcccccaggaacagccattttgcacatcaagttcaca
gatgacccgacccttgcgatttgcaatgacagcggaggctccgtcttcgaactgtcattt
aagagagtgatgggagtgagaacctgcgagtctcgatgtctgttcagcggatccaagggg
gaagtttgctgtattgagcctttgcacgcaaagacagaactgagagatcatcctattacc
caatactccctgctagcaatggcctccttgactaagattcttgtcattgggttgaagcca
tctctgaaagtatggatgacttttccatatggtcgtatggatccctccagtgttcctttg
ctggcgtggcactttgttgctgtacagaactcagtaaaccccatgcttgcattctgtcgt
ggagatgtggttcattttcttttggtaaagagagatgattcgggtgcaatacatgttact
aagcagaagcagctgcatctgcattacgacctcatcaattttacttggatgaattcgcgc
acggtggtgcttctggatagcgtggagaagctccatgtgatagatcgccagacgcaagag
gagttggaaaccatagagatttcagaggttcagctagtctacaacagcagccacttcaaa
tcgctggccacagggggcaatgtcagccaggctctggcactggttggagaaaaagcctgc
tatcagtccatcagcagctgtggcagtcagatcttctaccttggtacaaagtctgttcat
gtgatgacattaaggagctggagagagagagtggatcaccttctgaaacaagactgtctt
actgaggccctggctctagcttggtctttttatgaaggtaaagcaaaggctgttgtaggg
ttgtctggagatgtcggcaagcgaaaggcagtcattgcagacagaatggttgaaatcctt
ctccattacaccgatcgaactttgaagaagtgtcccgaccagggaaaaatccaagttatg
gaacaacactttcaggacatggtgcctgtcatagtcgagtactgcctcttacttcagcgc
acggatcttttattcagccaggtgtatgacaagatgagtgagaattctgtggccaaaggg
gtcttcctggagtgcctggagccatacattttaagtggcaagctgatgggaatgacagct
caagtgatgaaagacttgctgcttcacttccaagataggaacctgttggagaatatggag
gcctgcattgtgcacatggatatcaccagcctcgacatacagcaggtagttcttctttgc
tgggaaaatcatctctatgatgccatgatctatgtctataacagtggaatgaatgacttc
cttagtccaatggagaggttgttcaaagtcatcgctcctccattgaatgctgggaagtct
ctcacagatgagcaggtggtgatgggcaacaagcttctagtctatataagctgctgtttg
gcaggtcgtgcttatccgttgggtgatattcctgaagatctggttcccttggttaaaaac
cagatctttgaatttcttatccgcctccactcggccgaggcatccactgatgaagaagtt
tatccctatgttcgtacgctgctgcactttgacacccgggagttccttaatgtccttgca
ctgacttttgaagatttcaagaatgacaagcaagcggtggagtatcaacagagaatcgtg
gacatcctgctaaaagtcatggtggaaaattctgacttcaccccatcgcaggttgggtgt
ctctttaccttccttgctcggcagctcgccaagcccaacaacacgttgtttgtgaacagg
acactttttgatcaggtccttgaatttctatgcagtcctgatgatgattcccgacactct
gagagacagcaggtcctgttagaactgctgcaggctgggggaatagtacagtttgaagag
aaccgtctcatccaaatggcagaaaaagctgaattctaccaaatttgtgagtttatgtat
gaacgggagcatcgctatgaccgaatcattgattgttacctgcgtgatccagtgagaaag
gaagacgttttcaactacatccacaatattttgtccattcctggatacagcacagaggag
aagcattcagtgtggcagaaagctctggaacatatggaggagctgcttttgctgagccct
ggcaaagctgcagacctgatcaccactcacttcaatgatcagcttgaggggatcattaac
aaccttcaggaccagttcttgcttttccagtttttgaggagtcttcttgacccaagggaa
ggaatcaatcaggatctgatccacgtatctccctgcatcactgagcagttcattgagttg
ctgtgtcactacagtcctgaccaggttttagagatgctacaagtcctggagttctacaga
ctggaggagaccattcagatcactcaaaaacaccaactccacgaagcttcctcatacctc
ttggaaaagaaaggagatgtccacggtgctttcttggtaatgcttgagcaactgcaaagc
aagctgctgatgcttacacgggaagatgaaaattcaacacagtcccattcgataaaggat
attgaagctaccttactgaaaacaattgcactttgccagaggaattcacataatttaaac
cagcagcagcgagaggctctctggtttcccctcctggaggctatgatgtcgccacagaaa
ctgtcaagttcttcagcctcatgccgatactctgaacatctgaagattttgaccatgcag
gtgctcaacaacatggctgcttttattgcccttccatcaatcctgcagagaattctacag
gatcctgtttatggtaaagggaaacttggagaaattcaaggacttgtactggggatgctg
gatacgtttaactatgagcagacccttctagagactaccactaacctcctaaaccatgat
ctccactggtccctttgcaacctgagagcctctgtcaccagagggctgaccccgaaacag
gattattgttgtatctgtctgcagcaatacaagagaaggcaagagactgctgatgaaatc
attgtcttcagctgtggccatctctaccactccctctgcctgctgagcaaagagtgtggc
ctggaaacccaagggctgatgagatggacatgctacaaatgtaactccagtagcaaaggg
gggaagctatgtgagagcttctcagagttgaaaaaaggaaccagcacatctctggctcag
gcaagttcagagtctgcgttggatccccagcaaatccaggcctttgatcaactctgccga
ctttaccgaggaacctccaggttggctctcctgacagagctgtcccggagtcgtggtgga
gaaaggcccgggccactcagcatctcacaaggcgactctgccctgagcagcgttttccag
aatgagaatttccagctgcaccttgctccccctccattcacagaggagtaa
DBGET
integrated database retrieval system
