Crocodylus porosus (Australian saltwater crocodile): 109316597
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Entry
109316597 CDS
T07440
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpoo03016
]
109316597 (RTCB)
Enzymes [BR:
cpoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109316597 (RTCB)
Transfer RNA biogenesis [BR:
cpoo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109316597 (RTCB)
Prokaryotic type
tRNA splicing ligases
109316597 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
109316597
NCBI-ProteinID:
XP_019400346
Ensembl:
ENSCPRG00005018583
UniProt:
A0A7M4G3D7
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKKGFVPNMNVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagctacaatgacgagctgcagtacctggacaagctcgacaagaattgctgg
cgcatcaagaagggtttcgtgcccaacatgaacgtggagggcgttttctatgtcaacgac
ccgctggagaagctcatgtttgaggagctgcggaacgcctgccgcggcggcggtgctggt
ggtttcctgcctgccatgaaacaaattgggaatgtggctgcactacctggcattgtccat
agatcgattgggcttcccgatgtccattctggctatgggtttgctattggcaacatggct
gcctttgatatgagtgacccagaggcagtggtgtcaccaggtggtgttggttttgacatc
aactgtggtgtccgcttactgcgtacgaatctggatgaatgtgatgtacagcctgtgaag
gaacagcttgctcaggccatgtttgaccatattcctgtgggtgtggggtccaaaggtgtc
atccccatgaatgccaaggacttggaagaggccctggaaatgggtgtggactggtctctt
cgggaaggatatgcttgggcagaggacaaagagcactgtgaggaatatgggaggatgctg
caggctgatccaaataaggtctcctcaagagccaagaaaagggggctgcctcagctgggg
actctgggagcagggaaccattatgcagagatccaggttgtggatgacatctataatgag
tatgctgccaggaagatgggcattgaccacaagggacaagtgtgtgtaatgatccacagt
ggcagcagaggcctgggccaccaagttgctacagatgcattggtggccatggagaaagct
atgaaacgagacaagatcatagtgaatgatcgccagctggcatgtgccaggattgcttct
ccagagggacaggactatttaaaaggaatggctgcagctgggaactacgcatgggttaac
cgctcttccatgactttcctaactagacaggcctttgccaaagtcttcaacacgactcct
gatgaccttgacatgcatgtgatttatgacgtgtcacacaacattgccaaagtggagcaa
catgtggtggatggaaaagagcgaaccctgctggtgcatagaaaaggatcaactagagct
ttcccccctcatcatcctctcattgctgttgattaccagctgactggacagcctgtgctg
attggtgggactatgggcacctgcagctatgttcttactggtacggatcaaggcatgacc
gagacctttggaaccacttgccatggagctggtcgtgcactatcccgagccaaatcccga
cgtaacttggacttccaggatgtgttagacaagctggctgacatgggcattgccattcgt
gttgcttctcccaaactggtcatggaggaagcaccagaatcctataagaatgtgacggat
gtggtgaatacgtgccatgctgctggcatcagcaagaaggctatcaaactgagacctatt
gctgttattaaaggatag
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