Crocodylus porosus (Australian saltwater crocodile): 109317270
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Entry
109317270 CDS
T07440
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109317270 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoo03041
]
109317270 (PRPF8)
Spliceosome [BR:
cpoo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109317270 (PRPF8)
Complex C
U5 SnRNP specific factors
109317270 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109317270
NCBI-ProteinID:
XP_019401410
Ensembl:
ENSCPRG00005015922
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAAVFPYRAGCAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcgcgggctgcgcgcccgtgcctagcccgctggcgccg
ctgcccgactacatgtcagaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggcgaagcgctacgcggagaagaggaagttcgggttcgtggacgcgcagaaggaggat
atgccgcccgagcacgtccgtaagatcatccgcgaccacggcgacatgaccaacaggaag
ttccggcacgacaagcgggtctacctgggggccctcaagtacatgcctcacgccgtgctg
aagctgctggagaacatgccaatgccgtgggagcagatccgcgacgtgccggtgctgtac
cacatcacgggcgccatctccttcgtgaatgagatcccgtgggtcatcgagcccgtgtac
atcgcgcagtgggggtccatgtggatcatgatgagacgcgagaagagagaccggcgtcac
ttcaaaaggatgcggttccctccctttgacgatgaggagccgcctctcgactatgctgac
aacatcctggatgtggagccgctggaagccattcagctggagctggacccagaggaagat
gctcctgtcctggactggttctatgaccaccagcccctgaaagacaacaggaagtatgtg
aatggttccacataccagcgctggcagttcactctccccatgatgtccaccttataccgc
ctagccaatcagctgctgacagatcttgtggacgacaactacttctatctgtttgacctg
aaggccttcttcacttccaaggccttgaacatggctattcccgggggtccaaagtttgag
cctcttgttcgagacattaacctgcaggatgaagactggaacgaattcaacgacatcaac
aaaatcatcattaggcagcccatcaggacagagtacaaaattgctttcccgtacctatac
aacaacctgccacatcacgtgcatctgacctggtatcatacgccaaatgtggtcttcatt
aaaacggaagatccggacttaccagctttctactttgatccattgatcaatccaatctct
cacaggcactctgtcaagagccaggagccattgcctgatgatgatgaagagtttgagtta
ccagaatttgtggaacctttcctgaaagacacaccactgtatacagacaacacggccaat
ggcattgcactgctgtgggcccctcggcccttcaacctgagatctggcaggacacgcaga
gctcttgacatcccgctggtcaagaactggtatcgggagcattgcccagctgggcagcca
gtgaaagtgagggtctcctaccagaaactgctgaagtactatgttctgaatgcgctcaag
cacagaccccctaaagctcagaagaagaggtacctgtttcgctccttcaaggccacaaaa
ttcttccagtcaacaaagctggactgggtagaagtagggctgcaggtttgccgccaggga
tacaacatgctgaacttgctgatccacagaaagaacctcaactatctccatctggactac
aacttcaatctcaaaccagtcaagaccctcaccaccaaggaaaggaagaagtctcgtttt
ggtaatgctttccatctgtgcagagaggtgctgcgtctgaccaaattggtggtggatagc
catgtccagtacagactgggaaacgtggatgcgttccagctggctgacggcttgcagtat
atctttgcccatgtgggacagctgacagggatgtacagatacaagtacaaactgatgagg
cagattcgtatgtgcaaggacctgaagcatctcatttactacaggtttaatacggggcct
gtggggaagggtcctggctgtggcttctgggccccaggctggcgggtatggctgttcttc
atgagaggcatcactccattgttggagcggtggctggggaacctgctggccaggcagttt
gagggtcgtcactcaaagggcgttgcaaagaccgtcaccaagcagcgtgtggagtcccac
tttgacctggagctgagagccgcagttatgcacgacatcctggacatgatgccagaaggg
atcaagcagaacaaagctaggaccatcttgcagcacttgagcgaagcctggcgctgctgg
aaggccaacatcccttggaaggtccctgggctgccaactcccattgaaaacatgatcctg
agatatgtgaaggcaaaggctgactggtggactaacactgcacactacaatcgagagcgg
atccgccggggtgccaccgtggacaagactgtgtgcaagaagaacctgggccggctgacc
aggctgtacctgaaagctgagcaggagaggcagcataactacctgaaggatggtccctac
atcactgcggaggaggcagttgctgtgtataccaccacagtgcactggctggaaagtagg
agattttcacccattccattccccccactctcctacaagcatgacaccaagctgctcatc
ctggccctggagaggctgaaggaagcctacagtgtgaaatcccgtctgaatcagtcacag
agagaggagctgggtctgatcgaacaggcctacgataacccccatgaagctctgtccaga
atcaagcgacaccttctcacccagagagctttcaaagaggtgggcattgagttcatggac
ctctacagccacttggttcctgtgtacgatgttgagcccctggagaagattacagatgcc
tatctggatcagtacttgtggtatgaggctgacaagcgaagactcttccctccgtggatc
aaaccagctgacactgaacctcccccactgttggtgtacaagtggtgccaaggcattaac
aatctgcaggatgtctgggaaacgagcgagggtgaatgtaacgtgatgctggagtctcga
tttgagaagatgtatgagaagattgacttgacactgctcaacaggctcctgcgtctcatt
gttgatcataacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaatcacaccaattcctacgggattattcggggcctgcagtttgcttcctttatt
gttcagtattatgggctggtgatggacctcctggtgctggggcttcaccgagctagtgag
atggccggcccaccccagatgccaaatgacttcctcagcttccaagacattgccacagag
gtggcccatcccatccgcctcttctgcagatacattgaccgaattcacatctttttcagg
tttacggcagatgaggcgagggacttgatccagcgctacctgaccgagcatcctgacccc
aacaatgagaacattgtgggttacaacaacaagaagtgctggccccgtgacgcccgcatg
aggcttatgaagcatgatgtgaatctgggccgtgctgtgttctgggacatcaagaaccgc
ctgcctcgctcagtcactaccgtgcagtgggagaacagctttgtttcagtctatagcaaa
gacaaccccaatcttctgtttaacatgtgcggctttgagtgccgaatcctgcccaaatgc
cgcaccagctacgaggagttcacgcacaaggacggcgtgtggaacttacagaatgaggtg
accaaggaacgcactgctcagtgcttcctgcgtgtggatgatgagtcgatgcagaggttt
cacaaccgtgtgcggcagatcctcatggcttccggctccacgaccttcactaagatcgtg
aacaaatggaacacggccctgatcggcctgatgacctatttccgggaggctgttgtgaac
actcaggagctgcttgacctgctggtgaagtgtgagaacaagattcagacccggatcaag
atcggcctgaactccaagatgccgagccgcttcccccctgtggtgttctacacccccaag
gagctgggcgggctgggcatgctgtccatgggccacgtcctcatcccccagtctgacctg
aggtggtccaagcagacagacgtgggcatcactcacttccgctcaggaatgagccatgag
gaggaccagctgattccaaatctgtaccgctacatccagccatgggagagcgagttcatt
gattcacagagggtgtgggcagaatatgcactcaagaggcaggaagctattgcccagaac
aggcgtctgacactggaggatctggaggactcgtgggacaggggaattcctcgcattaac
actcttttccagaaagaccgtcacacactagcttatgataaaggctggagggtcaggaca
gacttcaaacagtaccaggtcctgaaacagaacccgttttggtggactcatcagcgccat
gacgggaagctttggaacttgaacaactaccgcacagacatgatccaggcactgggcgga
gtggaggggatcctggagcacaccctcttcaaggggacctacttccccacctgggagggt
cttttctgggagaaggccagtggctttgaggagtccatgaagtggaagaagctgacgaat
gcccaaagatcgggtttgaaccagatccccaacagaagattcaccttgtggtggtctccc
accattaacagagctaacgtctatgttggtttccaggtgcagctggatttgactggaatc
ttcatgcacggcaagatccccacgctgaagatttccctcattcagatcttccgagcccac
ttgtggcagaagatccatgagagcattgtgatggatttgtgtcaagtgtttgatcaggag
ctggatgcccttgagattgagactgtgcagaaggagaccatccaccccaggaagtcctat
aagatgaactcctcctgtgcagatatcctcctcttcgcctcctacaaatggaacgtgtca
cggccatcactgctcgcggactccaaggatgtgatggacagcaccaccactcagaaatac
tggattgacatccagctgcgctggggagattatgactcccatgatatcgagcgctatgcg
agagccaagttcttggattacaccacagacaacatgagtatctacccttctcccactggc
gtgcttattgccattgacttggcctacaacctgcacagtgcttatggaaactggttcccc
gggagcaagcccctgatccagcaggccatggccaagatcatgaaggccaaccctgccctg
tacgtgctgagagagcgaatccggaaggggctgcagctgtactcctcagagcccacggag
ccctacctctcctcccagaactatggggaactcttctctaaccagatcatctggtttgtg
gatgacaccaatgtgtacagagtcactatccacaaaacctttgaaggaaacttgaccaca
aagcccatcaacggggccattttcatcttcaaccccaggacagggcagctcttcctgaag
atcattcacacctctgtatgggcaggacagaagcgtctgggccagctggcaaagtggaag
actgctgaagaagtggctgccctgattcgctccctccctgtggaggaacagcccaagcag
atcatcgtcaccaggaagggcatgctggaccctcttgaggtgcacttgctagacttcccc
aacattgtgatcaaaggctcggagctgcagctgcccttccaggcctgcctgaaagtggag
aagtttggggacctcatcctgaaggctactgagccgcagatggttctgttcaacctctat
gacgactggctgaaaacaatctcctcctacacggccttctcacgtttgattctgattctc
cgggcactgcatgtgaacaacgaccgagccaaagtgatcctgaagccagacaagaccacc
ataacagagccgcatcacatatggcccaccctgacagacgaggagtggatcaaggtggag
gtgcagctcaaggacctgatccttgcagactatggcaagaaaaacaatgtgaatgtggcg
tccctgacacagtcagaaattcgagatatcatccttggcatggagatctctgccccctct
cagcagcggcagcagattgcggagattgagaagcagaccaaagaacagtcgcagctcaca
gccacgcagacccgcactgttaacaagcatggcgacgagatcatcacttccacgaccagc
aactacgaaacccagaccttctcctccaagacagagtggcgagtcagagcgatctctgct
gccaatctccacttgagaacaaaccacatctatgtctcctctgatgacatcaaggaaaca
ggctacacctacatcctccccaagaacgtgctgaagaagttcatctgcatctctgacctg
cgggcccagattgcggggtacctgtatggagtgagccctccagataacccccaagtgaag
gagatccggtgcatcgtgatggtgccccagtggggaactcaccagactgtgcacctccct
ggccagctgccacagcatgagtacctcaaggaaatggagccccttgggtggattcacact
cagccaaacgagtcgcctcagctctccccacaggacgtcaccacccacgccaaggtcatg
gctgacaacccctcttgggatggggagaagaccatcatcattacctgcagcttcaccccc
ggctcctgcacgctgacggcctacaagctgactcccagcggctacgagtggggcaggcag
aacacggacaagggcaacaaccccaagggctacctgccttcccactacgagcgggtgcag
atgctgctatcggaccgcttcctcggcttcttcatggtgccagcgcagggctcctggaac
tacaacttcatgggtgtccgtcacgaccccaacatgaagtacgagctgcagctggcaaac
cccaaggagttctaccacgaggtccatcgcccctcgcacttcctcaacttcgccctgctg
caggaaggggaggtctactcggcagacagagaggatctctacgcgtag
DBGET
integrated database retrieval system
