Crocodylus porosus (Australian saltwater crocodile): 109318954
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Entry
109318954 CDS
T07440
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109318954 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoo03041
]
109318954 (DDX42)
Enzymes [BR:
cpoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109318954 (DDX42)
Spliceosome [BR:
cpoo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109318954 (DDX42)
Complex B
109318954 (DDX42)
Complex C
U2 SnRNP specific factors
109318954 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
109318954
NCBI-ProteinID:
XP_019404005
Ensembl:
ENSCPRG00005008233
UniProt:
A0A7M4EL94
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAIAPGKKEEPKLSQQSHSAFGTAGSSAGFGKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKSGDSDSEDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPNAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITTLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELELGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFLS
GPTKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNSNVMSNYEAYKPSTGAMGDRLSAMKAAFQSQYKSHFIAASLNNQ
KSGSSTAGASGWTSAGSLNSVPTNSAQQSAANPESQLATAAAKGIPGFTSAGNLSSVPSF
PPIGIQGYNNMNTSSNNREGGPGIGGPGIGGPGIGSPGIGGPGFGSPGIGGPGIGSPGIG
GPGIGSGRERYSDNRSGRHSDSPRHSDGGGRHSDGQRHGDGGGRHSDSYRHGDGRHFYKE
KAAEDSHRHSESRHSAGGSGSSRHGDSRNNGDPRNSGDPRNSNEGRINESRNIESKNSEN
RKEGGNRDNKSDGFAVPEPPKRKKSRWDS
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggacctggcaccaaaagaggctttggttttggtgggtttgcc
atagcccctggaaaaaaagaggaacctaagctctctcaacagtcccatagcgcttttgga
acagctggctcttctgctgggtttgggaagtcagggccacctcagctcccttccttctac
aaaattggttccaagagagctaactttgatgaggagaatgcgtactttgaggatgaagaa
gaagattccagcaatgttgatttgccgtacattcctgcagagaattcccccactcgccag
cagtttcattccaaatcgggagattctgacagtgaagatgatcctctggaagcattcatg
gctgaagtggaggatcaagctgctcgggacatgaagagacttgaagacaaagacaaggaa
agaaagaatacaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
ttccgctacatggcagaaaaccctaatgctggtgtggtacaagaagaggaggaagataac
ctggagtatgacagtgatggaaatccaattgcaccatccaaaaaaatcatcgatccactt
ccacctattgatcattcagagattgaataccctccatttgagaagaacttctatgatgag
catgaagagatcaccaccctcacaccccagcaggtggtggagctgcgacataagttaaat
ctgcgggtctctggtgctgctcctccaagaccgggcagtagttttgcccattttggattt
gatgaacaacttatgcatcagattaggaaatctgagtatacccagcccactcctatacag
tgtcagggtgttccagttgcactgagtggcagagatatgattggcatagctaagactggc
agtggcaaaacagctgcctttatttggccaatgttaattcacatcatggatcaaaaagaa
ctggaactgggcgatggtcccattgcagtgattgtgtgcccaaccagagagctttgccag
cagatccattcagaatgcaagcgctttggtaaagcatataacttacgctccgtagcagtg
tacggtggtggaagtatgtgggaacaagcaaaggctcttcaggaaggagcggagatagtg
gtctgcacaccaggtcgcttgattgatcatgtgaagaagaaagctaccaatcttcagagg
gtctcatatcttgtatttgatgaagcagatcgaatgtttgatatgggttttgaataccag
gtcagatcgattgccagccatgtgcgtccagacagacagactctcttgttcagtgctact
ttccgaaagaaaattgagaaattggcaagagatatcctgatcgacccaattcgagtggtg
cagggagacattggagaggcaaatgaagatgttacccagattgtagagattttcctctct
ggccctaccaaatggaactggctgactcgacgcctggtggagttcacttcttctgggagt
gttctcctgtttgtcaccaagaaagcaaatgcagaagagctagccaataatctcaagcag
gagggtcataatctaggcctccttcatggtgatatggaccagagtgaaaggaataaagtc
atttcagaatttaagaaaaagggaatcccaatactggttgctactgatgtggcagctcgt
ggtttggatattccttctattaagactgtggtcaattatgatgtggcccgggacatagat
acccacacccacagaattggacgtacaggcagagcaggcgagaagggagtagcctacact
ttgctgactcccaaggacagtaattttgctggtgatcttgtcagaaatctggaaggtgcc
aatcagcacgtttccaaagagctgttggaccttgcaatgcagaacccctggttccggaaa
tcccgtttcaagggaggaaaaggcaagaagctgaacattggaggtggtggcttgggatac
cgtgaacgccccggcctgggctcagaaaattctgaccgtgggaacaacagcaatgtaatg
agtaattatgaggcatacaagccatccactggggcaatgggagacagactgtctgcaatg
aaagcagcatttcagtcccaatataagagtcatttcattgcagccagcctgaacaaccaa
aaaagtggtagctccaccgctggtgccagtggctggaccagtgctgggagtttgaattca
gtaccaacgaattcagcacagcagagtgctgcaaatcctgagagccagcttgctacagct
gcagcaaaggggatccctgggttcaccagtgccgggaatctgagcagcgtccccagcttc
ccacccattgggattcagggatataataacatgaacaccagcagcaacaaccgagaaggt
ggccctggcattggtggccctggcattggtggccctggtattggtagccctggtattggt
ggccctggctttggtagccctggtattggtggccctggcattggtagccctggtattggt
ggccctggcattggtagtggcagagagagatacagtgacaaccgcagcgggcgccacagt
gacagtccgcgccacagtgatggaggcgggcgccacagtgatggtcagcgtcatggagat
ggaggtggccgccacagtgatagttaccgccatggagacggccgacatttctacaaggag
aaagcggcagaggacagccatcgccacagtgaaagccggcattctgctggtggaagcggc
agcagccgacacggcgacagccgtaataatggtgaccccaggaatagtggtgacccccgg
aatagcaatgaaggaaggatcaatgagagcaggaacatcgagagcaagaacagcgagaac
agaaaagaaggtggcaaccgagacaacaagtcagatggttttgctgtcccagagccccca
aaacgcaagaagagtcgatgggacagttaa
DBGET
integrated database retrieval system
