KEGG   Crocodylus porosus (Australian saltwater crocodile): 109319998
Entry
109319998         CDS       T07440                                 
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cpoo  Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cpoo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109319998 (TAF5L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpoo03021]
    109319998 (TAF5L)
   03036 Chromosome and associated proteins [BR:cpoo03036]
    109319998 (TAF5L)
Transcription machinery [BR:cpoo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109319998 (TAF5L)
   Coactivators
    SAGA/TFTC/STAGA complex
     109319998 (TAF5L)
Chromosome and associated proteins [BR:cpoo03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109319998 (TAF5L)
    STAGA complex
     109319998 (TAF5L)
    TFTC complex
     109319998 (TAF5L)
    SAGA complex
     109319998 (TAF5L)
    SLIK complex
     109319998 (TAF5L)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_Gbeta WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd TFIID_NTD2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_Aladin WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT140_1st Tricorn_2nd Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_WDR19_1st PROPPIN PEP5_VPS11_N eIF2A Ge1_WD40 Nbas_N
Other DBs
NCBI-GeneID: 109319998
NCBI-ProteinID: XP_019405421
LinkDB
Position
Unknown
AA seq 589 aa
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGGANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQHGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNFKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRNESNGLEPADMPTSILQNEAALD
LLQDSIKRVRDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDVLDEEEEEDDNVGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYFATGSTDKTVRLWSTQQGSSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNTPADGSSSELVGVYSGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgctacctcaagcgtcgt
cagtatgtagactcggaaggtcccctaaaacaagggctgaggctgtgtcagaccgctgaa
gagatggcagctaatctcacagtccaatctgaatctggtggtgccaatgtagtgtctgca
gccccctgcctggcagaaccacagcaatatgaagtacagtttggacgactacgcaatttt
ctcacagattcagattcccagcacagccatgaagtgatgcctcttctgtatcccctcttt
gtctacctccatcttaacatggtccagcacggcctaaagagcacagtggacagtttctac
agccgcttccatggcatgttcttgcagaatgccagtcagaaagatatcattgagcagttg
cagactacaatgactattcaagatatcctgtccaacttcaagctccgggcttttctagac
aacaaatatgtcatccgtcttcaagaggacagctacaactaccttcttcgctacctccaa
agcgacaacaacaatgctctttgcaaagttcttaccttgcacattcacctggatgtgcaa
cctgccaaaaggacagactaccagctttatgccagcggcagctcctcacgcaatgaaagc
aatggcctggaacctgctgacatgcctacttccatcctgcagaacgaggcagcgctggac
ttgctgcaggacagcattaagagggtcagagatggccccccttccttaaccaccatctgt
ttctatgccttctataacacagagcagttgctgaacacagccgagatctcaccagacagt
aagctgcttgccgctggatttgataattcttgtgtaaagttgtggagcctgcgatccagg
aagttaaaatctgagccgcatcttgtagacgtgtcccgaatccgcctggcttgtgatgtt
ctggatgaggaggaggaagaggatgacaatgtaggcacagaaatgaagatcctgagagga
cactgtggaccagtgtatagcacaaggttcctgtcagacagttcaggactcttatcttgt
tctgaagatatgtctatcagatactgggaccttggaagctttacaaacactgtgttgtac
caagggcatgcctaccctgtctgggatttggacatcagtccttgcagcctgtactttgcc
agcggttcccatgatcgcacagcgagactctggtcgtttgatcggacgtacccactgcgc
atatatgcaggccacttagcagatgtggactgtgtcaagttccaccccaattccaactac
tttgcaacaggctccacagacaaaactgtgaggctctggagtactcagcaagggagctct
gtgcgcctcttcacaggtcaccgcggccctgtgctagcactcgcattttctcccaatggt
aagtacctggcttcagcgggtgaagaccagcggttaaagctgtgggacttggcctctggc
acgctttacaaagaactgagagggcacacggacaacataaccagccttacctttagcccc
gacagtagtttgattgcctctgcatccatggataattctgttcgggtatgggacatccgg
aacacttattgcaacaccccagcagatggttcttcgagtgaactggttggtgtatatagt
ggacaaatgaataatgtactgagtgtacagtttatggcctgtaaccttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa

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