Crocodylus porosus (Australian saltwater crocodile): 109321290
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Entry
109321290 CDS
T07440
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo04140
Autophagy - animal
cpoo04148
Efferocytosis
cpoo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109321290 (VPS39)
04148 Efferocytosis
109321290 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109321290 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpoo04131
]
109321290 (VPS39)
Membrane trafficking [BR:
cpoo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109321290 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Motif
Other DBs
NCBI-GeneID:
109321290
NCBI-ProteinID:
XP_019407394
Ensembl:
ENSCPRG00005018427
LinkDB
All DBs
Position
Unknown
AA seq
835 aa
AA seq
DB search
MSSESGCCNRFEVTLEKSNKNFSKRIQQIHVVSQFKILISLLENNIYVHDLLTFQQITAV
SKAKGASLFTCDLQHSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMA
WCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADRKVAVGQDDLTVVLNE
EGVCTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGG
TNIVYVASNHFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNL
YAFNLFCQKRFDDSMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEK
AHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHT
NVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANS
PLKGHERTVQYLQHLGSENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLNF
LIENFKNLAIPYLEHIVYVWEETGSDFHNRLIQLYCERVQALMKEYLSTFPPDKTPLPAG
EEEGELGEYRGKLLAFLEISSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVH
ILKDTKMAENYCHKHYDRNKDGSKDVYLSLLRMYLSPPSVHCVGPIKMELPKPETNLPAA
LQVLELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLR
VQEERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNAVDT
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagaaagtggctgttgcaacaggtttgaagtgacactagagaagtccaacaag
aacttctcaaaaagaattcaacagattcatgttgtttcccaatttaaaattctcatcagt
ttgttagaaaataacatttatgtccatgacctgttgacgtttcaacaaatcactgcagtc
tctaaggcaaaaggtgcatccctcttcacttgtgacctacagcactctgatacaggggag
gaggtgctgagaatgtgtgtagcagtacgaaagaaactacagctttatttctggaaggac
agggaattccatgaattacagggggacttcagtgtaccagacgtgcccaagtctatggca
tggtgtgaaaactctatttgtgtgggcttcaagagagattattatctgataagggtggat
ggaaaaggatctatcaaagaactgttcccaacagggaagcagcttgagccactggttgcc
cctttagcagacagaaaagttgcagttggccaagatgatctaacagtagttcttaatgaa
gaaggggtctgtacccagaaatgtgccttgaattggacagatattcccatagctatggaa
catcagcctccgtacatcattgcagtgctgccaagatatgtagagatccgtacctttgaa
ccacggctgctggtgcagagtatcgaactgcagagaccacgcttcatcacctctggaggt
acgaatattgtatacgtggccagcaatcactttgtttggcgtcttattccagtctctatt
gcaacccagatacaacagcttttacaagacaagcaatttgaactggctctacaattggca
gaaatgaaggatgattcagatagtgagaagcggcaacaaattcatcacattaagaacctg
tatgctttcaacctgttctgccagaagcgttttgatgattccatgcaagtttttgccaag
cttggtacagatcctacacatgtaatgggcttgtatcctgatctgctgcctactgattat
agaaagcagttgcagtatcccaaccctttgccagtgctctctggggctgagcttgagaag
gcacacttagctctcatagactacctaacacagaaaagaagtcagctggtaaagaagctg
aatgactcggaccaccaatctagcacctcacccctcatggagggaacacccacaatcaaa
tccaaaaagaagctgctgcagataattgacaccacactgcttaagtgttacctgcataca
aatgtagctcttgtggcaccattgctacgtttggagaacaatcactgccacattgaagag
agtgaacatgtgttgaagaaggcacataaatacagtgaactgataatactatatgagaag
aaagggttgcatgaaaaagctttgcaggtattagtggatcagtcaaagaaagccaactcg
ccattgaagggtcatgagaggacagtacaatatctacagcatttgggctcagagaacttg
cacttggtgttctcctattctgtctgggtgctcagagactttcctgaagatgggctgaag
atatttacagaagacctccctgaagtagaagccttgccacgggacaaagtgctcaacttc
ttgatagaaaacttcaaaaatctggctattccttacctggaacacatcgtctatgtctgg
gaggagactggctcagacttccacaaccgcctgatccagctgtactgtgagagagtgcag
gcgttaatgaaggaatatctcagcaccttccctccagataaaactccactgcctgctgga
gaagaggaaggagaactgggggaataccggggaaagctccttgcctttcttgagatttct
agttgctatgaacctagccggcttatcagtgacttcccttttgatgggctcctggaagag
cgtgccctattgttgggtcgtatggggaagcatgaacaagccctcttcatttatgtccac
attctgaaggataccaaaatggctgaaaattactgccacaaacattatgacagaaacaaa
gatggtagcaaagatgtgtatctgtctctgctccgaatgtatctatcaccacctagtgtt
cattgtgtggggccgatcaagatggaactgccaaagcctgaaaccaatctcccagctgcc
ttgcaggttctagaattgcaccacagcaaattggatacaactaaggcaataaatctgctc
ccggcaaatacacaaattagcgagattagaatcttcctagaaaaggtccttgaggaaaat
gcccagaagaagcgattcaatcaagtactcaagaatcttctccatgcagaattccttagg
gttcaggaggagcggattttgcatcagcaggtaaaatgtatcatcacggaggagaaggta
tgcactgtgtgtaagaagaaaatagggaatagtgcgtttgccagatatcctaatgcaata
gttgtacattatttctgctccaaagaagtcaatgcagtggacacctga
DBGET
integrated database retrieval system
