Crocodylus porosus (Australian saltwater crocodile): 109322114
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Entry
109322114 CDS
T07440
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109322114 (HTT)
04131 Membrane trafficking [BR:
cpoo04131
]
109322114 (HTT)
03029 Mitochondrial biogenesis [BR:
cpoo03029
]
109322114 (HTT)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109322114 (HTT)
Membrane trafficking [BR:
cpoo04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
109322114 (HTT)
Mitochondrial biogenesis [BR:
cpoo03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
109322114 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
109322114
NCBI-ProteinID:
XP_019408528
Ensembl:
ENSCPRG00005002177
LinkDB
All DBs
Position
Unknown
AA seq
3095 aa
AA seq
DB search
MATMEKLMKAFESLRSFQQQQGPVAVPEEPLHRPKKELSTTKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSDDAESDVRMVADECLNKVIKALMDSSLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDEHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKEAEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPDLLHALTTLGGIAQVSVSKDESSSR
SRSGSIVELIAGGGSSCSPVLARKQKGKVLLGEEEGLEDDPETRSEVSTTTFTASMKSEI
TSELASSSGVSTAGSVVSSATDPTGHDIITEQPRSQHTLQSDSVDLSGCDLTSTATEGEE
DDVLSRSSSQISAVQSDPTMDLNDGTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLEGA
ESQYSGMQIGQLQDEEDEAANLLPDESSEPFRNSSFALQQPHLLKNMGHSRQPSDGSVDR
FASKDEALEPGDHENKPSRIKGDIGHYTDGNSAPLVHCVRLLSASFLLTGEKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLETMGEEYEEQYVSDILNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVENWIVAVRSSTGNLFSLVDCIPLLQKTLKDESSVTCKL
ACAAVRHCIMSLCSGSCSELGLQLITDLLTLRNSSYWLVRTELLETLAEIDFRLVSFLEG
KTDNLHRGVHHYIGLLKLQDRVLNNVVISLLGDEDPRVRHIAAASLMRLVPKLFYSCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRV
VSAISHALTTSTTRALTFGCCEALYLLSTTFPVCTWNVGWHCGVSQMSPSEESRKSCTIG
MAGMVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWTTEEDANTGAAKQEES
WPALADRTLVTLVEQLFSHLLKVINICAHVMDDVTPGPAIKAALPSLTNPPSLSPIRRKG
KERDSVEQTSVPMSPKKGSETNPAARQTDTPGPAPTSKSSSLGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREP
MMATVCVQQLLKTLFGTNLASQYDGLSSNPSKSQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSVTKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGANKADAGRELDTQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISRQAIDRLRYGENVSTPED
QSEVKQAKYMPEETFSRFLLQLVGILLEDIVHKQLKVEMNEQQHTFYCQELGTLLMCLIH
IFKSGTFRRITAAATRLFTGDGSDGSFYTLESLSGLVQAMIPTHPSLVLLWCQILLLVNY
TNYSWWSEVHQTPKRHSLSSTKLLSPQISGDSDESDSESKLGMCNREIVRRGALILFCDY
VCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLA
TPTTLKKTLQCLEGIHLSQSGAVLMLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQ
NSVAQLPVEELDRIQEYLQNSGLGARHQRLYSLLDRFRLTVAPETNSPSPLVTLHPLDGE
NRPALENLTPDKDWYVSLVRSQCCVRSDSALLEGAELVNRIPQPELNSFMTTKEFNLSLL
SPCLSLGMNEMSGDQKTSLFETARWVTLDHVSTIVQKLPANHQVFQPLQPIETSAYWNKL
SDIFGDALVYQSVMTLCRALAQYLLLLSKLPACLRIPPDKESDILKFVVMSLEALSWHLI
HEQVPLSIDIQAVLDCCCLTLQQPALWNALASAVYVTHACSLINCVRFLIEAVAVKPGDQ
LLSPERRKNTSKIVSEGEVDSNDQKMKHVTKACEMVAELVECLQTVLALGHMRNSSIPAF
LTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPSGDFGTVFPEMPVEFLQEKEIFK
EFIYRINILGWTSRTQFEETWATLLGVLVTQPIVMDQEESQQEEDTERTQINVLAVQAIT
SLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVVRGIVEQEIQAMVSKRDN
IATHHLYQAWDPVPSLSPATTAALISHEKLLLQINTERELGNMDYKLGQVSIHSVWLGNN
ITPLREEEWDEDEDEENDMPAPSSPPTSPINSRKHRAGVDIHSCSQFLLELYSQWILPSN
PSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILIQYLVPATC
KAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIIS
EYLLSNLRGVAHCVSVHNQQHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCAVMVSGND
ESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVHSPHRAMAALGLMLTCMY
TGKEKISPSRATDANPTAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDF
FPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRT
PVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNLFCLVAIDFYRHQIDEEL
DRRAFQSVFEVVASPGSPYHCLLTCLQNVHKITAC
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgaaggctttcgagtcgctgcgctccttccagcagcag
cagggcccggtcgctgtccccgaggagccgctgcacaggccaaagaaagaactttcaact
accaagaaagatcgagtgaatcactgcctgacgatatgtgaaaatatagttgctcaatct
ttaagaaattctccagaatttcagaaactgctgggaattgcaatggaactctttcttcta
tgcagtgatgatgcggagtctgatgtcaggatggttgctgatgagtgtctcaataaagtt
attaaagctttgatggattccagtcttccgaggttacagttagaactctacaaagagatt
aaaaagaatggtgcttcccgaagtctacgagctgcactctggcgatttgctgagcttgct
catctggttaggcctcagaagtgcaggccgtatttagtgaacctgttgccgtgtttaacg
cgaataagtaagcggcctgaagaatctgtacaagagacgttagctgcagcaattccaaaa
atcatggctgcatttggcaactttgcaaatgacaatgaaattaaggttttactgaaggcc
ttcatagctaatcttaaatccagttctcctaccatccgtcggacagcggcaggatcagca
gtgagcatctgccaacattcacgaagaacgcaatatttttatgcctggctattgaatgta
cttttaggtttgttggtacctgtagaagatgagcatcccactcttttaattcttggtgta
ttactcacgcttagatatctcatacctttactgcagcagcaagtaaaggatactagcctg
aaaggtagctttggtgtaacacgtaaagaagcagagatttcgccttcaccagaacagctt
atacaggtttatgaattgactttgcattacactcagcatcaggaccacaatgttgtgact
ggagctttagaactattgcagcagctttttagaacaccccctcctgatctcctccacgct
ctgaccactttgggaggcattgcgcaggtcagtgtatccaaagatgagtctagcagcagg
agccgcagcggaagcatagtggaacttatagctggagggggttcttcatgcagccctgtt
cttgcaagaaagcaaaaaggtaaagtgcttctaggagaagaagaaggtttggaggatgat
cctgaaacacggtctgaggtcagcaccacaacatttactgcctctatgaagagtgaaata
accagcgaattggcttcctcatcaggtgtatcaacagctgggtcagtagtaagttctgcc
accgatcccactggacatgatatcatcactgaacagccacgttcacagcatactttgcag
tcagactctgtagacttgtccggctgtgatttgaccagcacagctactgaaggggaagag
gatgacgtgcttagccgaagttccagccaaatcagtgctgtgcaatcagaccccactatg
gatttaaatgatggcacacaggcttcctcaccagttagtgatagctctcagactactaca
gaaggcccagattcagctgtgaccccttcggacagttctgaaattgttctagaaggggct
gaaagccagtattctggaatgcagattggacagctgcaggacgaggaagatgaggctgca
aaccttctcccagatgaatcttcggagcctttcagaaattcatcctttgcccttcagcaa
ccccacttattgaaaaacatgggccatagcaggcagccttctgatggtagtgttgataga
tttgcatcaaaagatgaagcactggagcctggtgatcatgagaataagccttctagaata
aagggtgacataggtcactacacagatggaaattctgctcctcttgttcattgtgttcga
cttctatctgcttcttttctacttactggagagaagggtgctttagttcctgacagggat
gtaagagtcagtgtgaaagccttggctgtaagctgtgttggtgcagctgttgcccttcat
cctgaatctttcttcagcaagctgtataagacacccttggaaactatgggagaagagtat
gaagagcagtatgtgtcagatattttgaactatattgaccatggagatccccaaattaga
ggagctactgccattctctgtggaacgattgtcaattctattctcattaaatcacgcttt
gatgtggaaaactggatagtagctgtcagaagttcaacaggaaatctcttttctctggta
gactgtatacctctgttacagaaaacactgaaagatgaatcctcagttacatgcaaactt
gcttgtgcagctgtaaggcattgcattatgagcttatgcagtggcagttgcagtgaacta
ggcttacagttgatcaccgaccttcttacactgaggaatagctcctattggctagtaagg
acagaactcctggaaactcttgctgagattgatttccggttagtcagctttttggaagga
aaaacagataatttgcacagaggagttcatcattatattggtctgttgaagctgcaggat
agagtgctcaataatgttgtgatctctctgcttggagatgaagacccaagggtgcgacac
atagctgcagcttctttaatgaggcttgttccaaagctgttttatagctgtgatcaagga
caggctgatccagtagtggcagtagcaagggaccaaagcagtgtctacctgaaacttctg
atgcatgagactcagcctccatctcactttgcagtgagcactatcaccagaacttacaga
ggatacaacatgcttcaaagtccaacagatgtcactatggaaaacaacctttccagggtt
gtctctgcaatttcccatgcattgacaacatcaactacaagagcgcttacattcggctgt
tgtgaagctttgtatcttctctccacaacatttccagtctgcacctggaatgtaggatgg
cactgtggcgtttcccagatgagtccttcagaggaatctcggaagagctgtaccattgga
atggctggtatggttctctcccttctttcatctgcctggttcccactggatctttctgca
caccaagatgccttgattttgacaggaaacttgcttgcagctagtgctcccaagtgtttg
aaaaacccttggactactgaagaagatgctaatacaggagctgctaaacaagaagagtcc
tggccagctttggctgaccgaactcttgtaactttggtagaacagcttttttctcacttg
ctgaaggtcattaatatttgtgctcatgtaatggatgatgttactcctggcccagcaata
aaggcagcattaccttctctcacaaacccaccttctctaagtcctattcggcggaaaggg
aaagagagagattcagttgaacagacatctgtaccgatgagccctaaaaagggtagtgaa
actaatccagctgctaggcaaactgatactccaggacctgctccaacaagcaaatcatcc
tcgctgggcagtttctatcatcttccatcatatctcaagttatatgatgtcttaaaagct
acgcatgctaactataaggtcactctggatcttcagaacactaatgaaaagtttggatgt
ttcctgcgatctgctttggatgtcctctctcaaattttggaacttgcaactcttcaagac
attggaaagtgtgttgaagagattttggggtatttgaaatcctgcttcagtagagaacca
atgatggcaacagtttgcgtgcaacaattgctgaagactttatttgggacaaacttggca
tctcaatacgatggcttgtcttccaaccccagcaaatctcaaggcaaagctcagcgctta
ggctcttcaaatttaaggcctggcctctatcattattgcttcatggcaccttatacacac
tttacgcaggcacttgctgatgctagtctaaggaacatggtacaggctgagcaggaacat
gatgcctcaggatggtttgatgtactgcagaaagtttcaacacaactgaaaactagcatt
tcaagtgtaacaaaacatcgtgctgacaagaatgctattcacaatcacatccgcttattt
gaacctcttgtcataaaagctttaaagcagtacactacaacaacatctgtacagctgcag
aggcaggttttagacctccttgcacaactggttcaactacgcgttaactactgtcttctg
gattcagatcaggtgttcattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaatatctttttcttcttggtattattgtct
tatgagcggtatcactccaagcagataataggaattccaaagatcattcagctatgtgat
ggtatcatggccagtggaaggaaagctgttacacatgctataccagctctgcaacccatt
gtccatgatctctttgtattaagaggagcaaataaagctgatgctggaagagaactagac
acacagaaagaagtggtagtgtcaatgttactgagactcatccaataccatcaggtgctg
gagatgttcatcctagtactgcagcagtgtcacaaagagaatgaagacaaatggaaaagg
ctgtcccggcaaatagcagacattattcttccaatgcttgcaaagcaacagatgcacata
gattcccatgaagctttgggagtattgaacactttgtttgaaattttggctccttcatct
ctccgtcccgtggacatgctgttaaggagtatgtttgttactcccaaaacaatggcatca
gtgagcactgttcagctatggatatctggaatccttgctatcctcagagttctcatttct
cagtcaacagaggatatagttctgtctcgtattcaagagctttccttctccccatactta
atctcacgtcaagcaattgacagactacggtatggagagaatgtgtccactcctgaagac
caatctgaggtgaaacaggctaagtatatgcctgaagagacattttccaggttcttatta
cagctagtgggcattcttctggaagacattgtacataaacagttgaaagtggagatgaat
gagcagcagcatactttctattgccaagagctgggcacactgcttatgtgccttatacat
atcttcaaatcaggaacattcagaagaatcacagcagcagccaccaggctttttacagga
gatggatctgatggtagtttttatacccttgaaagcctgagtggtcttgttcaggccatg
attcccacgcatccatccttggtactgctctggtgtcaaatccttcttctcgtcaattac
accaactacagctggtggtctgaggtgcatcagactccaaagagacacagtctttccagt
actaaactgctcagtcctcagatatctggagacagtgatgaatctgattcagaatccaaa
cttggcatgtgcaatcgcgagattgtacgaagaggagcgcttattcttttttgtgactat
gtttgtcaaaatctacatgattcagaacatttgacctggcttattgtgaatcatgttcaa
gatctgattaatctatctcatgagcctccagtacaagactttattagtgctgttcacagg
aattcggctgccagtggtctttttatccaggctattcagtctcggtgtgagaacctcgca
actccaacaactctaaagaagaccctgcaatgtctggaggggattcatctcagccaatct
ggtgctgtcttaatgttgtatgtggataagcttttatgtactccatttcgtgtgctggct
cgcatggttgatacacttgcttgtcgtcgagtagaaatgctgttggctgcaactttacag
aatagtgttgctcaattaccagttgaagaactggacagaattcaagaatatcttcaaaac
agtggattaggagcaagacaccaaagactttactcgctattggataggtttcgtcttaca
gtagcaccagaaacaaatagtccctcgcccttggttactcttcacccactggatggggaa
aaccgaccagccctagagaatctaactccagacaaagactggtatgtgtcgctggtcagg
tcacaatgctgtgtcaggtcggactctgcgctgctggaaggtgcagaactggtgaataga
attcctcaacctgaactgaactcattcatgaccactaaggaattcaacttaagcttgttg
tctccctgtttaagccttggcatgaatgaaatgtcaggagaccagaagaccagtcttttt
gaaactgctcgttgggtgactctagatcatgtgtctaccattgtacaaaaacttccggcc
aaccatcaagtttttcaaccattgcagccaattgagacttcagcctactggaacaaactg
agtgatatctttggcgatgcgttggtgtatcagtctgtgatgacactctgtcgtgcactg
gctcagtatttgctgttactctctaaactaccagcatgtcttcgtattccacctgacaaa
gaaagtgatatattgaagtttgttgtaatgtcactagaggcactgtcatggcatttaata
catgaacaggtccctctaagtatagatattcaagctgttttggattgttgttgcctgact
ttacagcaacctgctctctggaacgcgctggcttctgcagtgtatgtgacacatgcctgc
tctctaattaattgtgtacgatttcttatagaagcagttgcagttaaacctggagatcag
ctgcttagtccagagaggagaaagaatacttcaaaaatagtcagtgaaggtgaagttgat
tccaatgaccagaaaatgaagcatgttacaaaggcttgtgaaatggtggctgaactggta
gagtgtttgcaaactgttctagcattgggacacatgagaaacagcagtatcccagcattc
ctcactcctgtccttaagaacatcatcatcagcttggccagactacctctagtgaacagc
tacacaagagtacctcctttggtctggaagctaggctggtcaccaaaaccttcgggtgac
tttggtacagttttcccagaaatgcctgtcgaatttcttcaagaaaaagaaatatttaaa
gaattcatctatcgcattaacatactagggtggactagccgtacccagtttgaagaaaca
tgggctactcttcttggtgtgctggtaacacagccaattgtaatggaccaggaagaaagc
caacaagaggaggacacagagaggacccaaattaatgttcttgcagtacaagccataacc
tcattggtgctgagcgcaatgacaatacctgtggcaggcaatccggcagttagttgtttg
gagcagcagccccgcaacaaagctttaaaagctctggatacaaggtttgggaggaagtta
agtgttgttagaggaattgtggaacaagaaatccaagcaatggtatccaagagagataat
attgcaacacaccatttataccaagcctgggaccctgttccatcactttctcctgctacc
acagcggctcttatcagccacgaaaagcttttgctgcagatcaatactgagcgagaatta
ggaaacatggattataaactgggacaggtttctatacactctgtgtggctgggaaataat
atcactcccctgagagaagaggagtgggatgaagatgaagacgaggagaatgacatgccc
gctccttcctcaccaccaacctctcctatcaactccaggaaacatcgggctggtgttgat
attcattcatgctctcagttcttgcttgagctgtacagtcagtggatattgccatcaaat
cctagcaagagaacacctgtcatcttgattagcgaagtggtgcgatcgcttctggcagtt
tcagacttgtttacagaaagaaatcagtttgagatgatgtacacaactctgacagaattg
aggaaggtgcatccatcagaagatgagatcctcattcagtatttggtacctgccacatgt
aaggcagcagctgttcttggaatggataaagctgtagctgaaccggtgagtcgtcttttg
gaatcaaccctgcgtagcacgcacatgccaagtcggattggagctctccatggaattctt
tacattctcgagtgtgacctgcttgatgagacagcaaagcaactcattccaattatcagc
gagtatctgctttccaatctgagaggggtagcacattgtgtgagtgtccataaccaacag
cacatcttggtaatgtgtgctgcagcattctacttgatagagaattatccactagatgta
gggcccgagttctctgcaggaataatacagatgtgcgcagttatggtgtctggaaatgat
gaatctactccatccatcatataccattgtgtcctgagaggactagaacgactcctgctt
tcagagcaactctctagactggatagtgaatctctagttaaattaagtgttgacagagtg
aatgtacacagcccccaccgagcaatggcagcactggggttaatgctgacctgcatgtat
acaggaaaggagaaaattagtccaagtcgtgctacagatgcaaatcccacagcgccagac
agtgaatctgttattgtggctatggaacgggtctctgttctttttgataggatcaggaaa
ggatttccttttgaagctagagtagttgcacggatcctccctcaattcctagatgacttc
tttcctccacaggatgtaatgaataaagttattggagaatttttatccaaccagcagccg
taccctcagttcatggcaactgtagtatataaggtatttcagacactacataccactgga
cagtcatcgatggtccgtgactgggtgatgctttctctctccaacttcacccagagaaca
cctgttgctatggcaatgtggagtctttcctgtttctttgtcagtgcttccaccagtcag
tggatttcagcaattcttccacatattatcagcagaatgggaaaatcagagcaagtggat
gttaaccttttctgtttggtggccatcgatttctacagacatcaaatagacgaagagcta
gaccggagagcctttcagtctgtgtttgaggttgtggcatcaccaggaagcccctatcat
tgtctgctaacttgtttgcaaaatgttcacaagatcacagcatgctaa
DBGET
integrated database retrieval system
