Crocodylus porosus (Australian saltwater crocodile): 109322209
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Entry
109322209 CDS
T07440
Symbol
ALMS1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpoo03036
]
109322209 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cpoo03037
]
109322209 (ALMS1)
Chromosome and associated proteins [BR:
cpoo03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
109322209 (ALMS1)
Cilium and associated proteins [BR:
cpoo03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
109322209 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ALMS_motif
FliN_N
Motif
Other DBs
NCBI-GeneID:
109322209
NCBI-ProteinID:
XP_019408721
Ensembl:
ENSCPRG00005018791
LinkDB
All DBs
Position
Unknown
AA seq
2870 aa
AA seq
DB search
MEPWYQLPAEADASHLMPALGTRVDLTTGENNLTEFPTLEEGSLSLTEEPGTQYEDVTHN
PLPEIQDSRFSPHFPLLMTYATPGERFLAETLFEQTDLQFAPLRGTPDVSDASEQHLRSL
QISEAVQLAAAEVSSHSDSGTLSQHPLAISAVEPYIVTCSSYISQPRLSSSGQITVQRKQ
GTEGQDCESDLGVTDLLPKEGGEDLTTPASKTLQNDSAKPQQSEASFAKEAKSAFVNDDP
FFLDSRVPAPALLELLEKEVGVTSHGGFSSSSENSSCRSVLTKDPEKDKTRQQVENTDLA
ESESKALEKYQESQQQLEEGKSTSELGSSEMSEPLQNPNAKDASSTKSAEMFMLRHSASL
SDSARLKFSGVTREPRGALLEEQPKQLCPTVMSEQRKEEPAADVITTNLSGNQPHQSVMT
NAKPPLLSSEKETSVVEIRAGVSGRESTLSDVIIERGHKDAGISPSFNLPLGDGSFCGYL
ACPIYQSTPGLFLGRHMKEEVPGKVIPLKSSLQASLTGLNEETSVKSSASTLTPSVEKCH
APANGREENRESLGTAYPYTGRIQSLPSLNFMEKVGAWNVSQSAEKMSDALALHSLGGVS
PRRQAYSATADSLNRILSKQNNISNLKSGLAASFGGEAGSMASLHVCDTQSTHVAPLARS
QSDNSVNIISREASQIEVVQVTNPEEVVQPAAGKNSDFAMPALKKREESLVDYTSQKFKA
VLVSAGSSDDEHDDEENSMGQSLDQNVLISSERVAQLLRQEGCDPNDKEKKYSSLEDEPR
HLHGPEHSAGHVSMDNFSDISPDSLNLLVSSQASSQVDLTSVSPSSVVSKHFFSNSEEEN
FTPSWAPTWKSPDEKELNIEERIPTYLRNLGIDQSPSSILTPFAPRGPIREVEFSPSELR
TLKGSTDTLTKHAQLSEGGSLSAVDITQTSFNSGNSTLSMSVAMCSDAGPDTPVPTELSP
QYSRSSKDKPLSQCSTAAYHQLELLTLLPDEGSLESSVAPRLVEPRQQLQAVAADFHSDE
EGPMLVSKHVQDLIDRCDSRDISSSLEKLSTSLLAEDIGEMEVKGELLSSNAVASENELN
KDQGNDPFIESSTLKEIQKLLAQAEKMTLSQFDPVPSLTPSREVTDSSLASIKKKDGIED
SRLVRDDSPALQRLLSRDETLTRKSMQEDNVLIKTLHSCKDSLKSERALAGNLPVSQETA
ELQNRPAEKIAGEDFRVAKPIGRSEPEGCSSATTDKNLLAPVAVTKSATSSESSIRRVLE
LEDPPTTAPLGTSATVLGDCEHGSSKASLAGSKEGDVIQGSDDSSSLDSLAARVRNLLKY
ESPEMHATQILKSVEEEEKKARTWVKLKLASHPHGSLPDLNEEDRKRIEEIKAELLLSAR
KSALAKDSWGNSSDIIPSQSHNQKHYPEHFPSPYSEQKQTDNQMQDFELEPSESYGRWVM
PVYTIDSPDYSLSSNTQFKALDTFQAQIPNQLHALATNPFDISIELTPSCKDVDAWLMGL
VDAPNAQTEEEVRFPAQKKLSVEKPSAEIAKQITSITFASRKRSLSPVLGTSLTEDALHG
VIPLQVGSTSIEKQQLEKRHLETSESCPSSPTATCTLASGVKPTADQDSFHHVVTDVVKP
GAHLGKDQAQESKSIYPDPCFSLVGTSFEAAQTSAQDAVGLGRLNARLPVADCDKKFNQE
SNTLNEPVPISFYQQGKTSPSSQAQVTEDPVYSPQAHLLKSHNNLTEKEDKLPFDIFSLH
HADMETGHGNGIHSPSPDQILAAMPVSPSSPTKKALSCVRITLSPKCATSEPCGNLRAEA
ETRFNDRIKSDVQPTLVRSPKTSLEPVSKLPTAELVPMDQGSSYFPRPGSLPPPSPVHPF
VPGTPGLAHDIKHVPLESSQRVPSLREAHTRGLDTSGRNVQDGFRTLVSAQTGKTTSDAI
TQITTESPEKTTFSAEIYVSTEEEENPALVSSRQKACRIPSLGASSQNQIFSSHRPAVCA
DQPLLVPYKPSGSREMYYVPHPKEAPRISPVRSETTIESSHSGSNDAVPPKFPVNVLGSR
EESPPDVTIKHKEGIYSKRPEPKLAWGKEKMAPQESDTESANPLKAVRTTHSVFKSAQFY
LHHPVPLQHEDYFLLNSEPLEGYPDTGPSRLPSRDCFQRMRAAEKDQCPPPLYREEDKED
EFAPLATVLDYSKIEDSKFCAPAGNEAFRKELIIQNDKRQAGQTKARDYPPRSSQMIGFQ
VRQKKDLPLKQSTESTGSLDDLWAKFLERQKKHPLPNVRSNELSLVERLDRLARVLQNPV
RHTLMPAKEESNFGGRTKGREQKKIRLQDRNESDAHRNALHAEERPQTSYDKKRLTESRK
YRAGERTISRIKQILEQQQYSDTLSDTSSETKPANDHSSVAITTTSESDVVSQTETEMAT
QTEVSSSISTIDTARLIRAFGHERVRVSPRLSHLYFTISQQKSRSDIWGQGSRTGKGVEY
LKATYAELHRKREIQVADCVSLDSVSTVSSSWGPSSALSTKRRARMLNKGIQAGDLEIVN
SATKKNTRDVGVTFPTPRSGQPRPWEPCSSADGVCGEPDGLVSDLQMPLGKGRQKGHTSS
LLMDKKTKRNRPQLPQVGVSWFVPAEDLKSDSRKENRSGSFSGPGPSWFEPLASTKPWRE
PLREKNWQEQRGSSLVQPIIPVRDVENKPPRPLVKMTLQEALVLHRPDFISRSGERVKRL
KLIMEERKIQSVLQNEREELFNPPEKRKGYKNASCLLSNRDFQVRQERRTIPKGEMVQRS
KRSNANNDVFRKGGLLGAATDRVEKQGQKRRIYEQLPEVRKRREEEKRKSEYNSYRLKAQ
LYKMLLVSMQEKEGDFHPVLGSVSEAHSFRRKWMIDSLCFYGSKTVTDGE
NT seq
8613 nt
NT seq
+upstream
nt +downstream
nt
atggaaccatggtatcagctcccagcagaagcggatgccagccatctcatgccagcattg
ggcacgagagtggacttgaccacaggtgaaaacaacctgactgagttccctaccttagag
gagggctcgttgtcgctgacagaagagcctgggacacagtatgaagatgtgacgcacaac
ccgctgccagaaattcaggacagtcgcttctctcctcacttcccactgttgatgacctat
gctacaccgggtgaaaggtttttggctgaaaccctgtttgagcaaactgatctgcagttt
gctccgctaagaggaacccctgatgtttctgatgcttctgagcagcatttaagatctttg
cagatcagtgaagctgtgcagctcgcagccgccgaagtatcctcacattcagacagcggc
acgctgtcccaacatccacttgcaatcagtgcagttgaaccttacattgtcacctgtagc
agctacatatctcagccccgactttcctcgtctggacagataactgtgcagaggaagcag
gggactgaaggtcaagattgtgaatctgacttgggtgtcacggatttgctccctaaagaa
ggtggcgaagatttaacaaccccagcttcaaaaacattgcaaaatgattcagctaaacca
cagcagtcagaagcttcttttgcaaaggaagccaaaagtgcttttgtaaatgatgatccc
ttctttctggacagcagagttccagctcctgctctcctcgaattgctggagaaagaagta
ggtgtaaccagccatggtggcttctcatcttcttcagagaactcctcatgcaggagtgtt
ttgactaaagacccagagaaagataaaacaaggcagcaagtggaaaacacagatctggct
gagagcgagtcaaaagcattagaaaaatatcaagagtcacagcagcagctggaagaagga
aagagcacttctgagctgggttcttctgagatgtctgaaccccttcaaaaccctaatgcc
aaagatgcatcttctacaaagtctgccgaaatgttcatgttgcggcacagcgcaagtttg
agcgactctgcaaggctgaaattctccggtgttactagagagcctcgaggagctcttctg
gaagagcagccaaagcagctgtgtcctacagtgatgtctgagcaacgcaaagaggaacct
gccgctgatgtgataacaacgaatctcagtggcaatcagcctcaccagtcagtcatgact
aatgcaaaacctcctttgctctccagtgaaaaggagacgtctgttgtggaaatccgggct
ggagttagtggacgcgaatcaactctttcagacgttatcatagagagaggacacaaagac
gcaggcatttcaccttcatttaatcttccgctaggtgatggctccttctgtggatatctg
gcctgtccaatctatcagtccaccccagggttgtttttaggcagacatatgaaggaggaa
gtacctggcaaggttatcccactcaaatcaagccttcaggcctctcttacaggcttaaat
gaagaaacttctgtgaagtcttctgccagcacacttacaccttctgtcgagaagtgtcat
gcgcccgcaaatgggcgggaagaaaacagagagtcattaggaacagcctatccgtatacg
gggagaattcagtctctgccttcacttaattttatggagaaagtcggggcttggaacgtg
agccagtcggcggagaagatgtctgatgctttggctttacacagcctgggtggagtttct
cccaggaggcaagcatacagcgcaactgcagattccttaaaccgtattttatcaaagcag
aacaacatcagtaacctcaagagtggtttagctgcatcctttggaggagaagcaggttca
atggcaagtttgcatgtctgtgacacacaatcaacacacgttgcacctcttgctcggtcg
cagtctgacaattcagtcaatataattagcagggaagcttcacagattgaagttgttcag
gtaacaaatccagaggaggtggttcagcctgcagcaggcaagaacagtgattttgctatg
cctgcacttaaaaaaagagaagaaagcttagtagactacacaagccaaaaatttaaagct
gtccttgtcagtgctggatccagtgatgacgaacatgatgatgaagaaaatagcatgggg
caaagtttggaccaaaatgtcttaatttccagtgaaagggttgcccagcttctgagacag
gaaggatgcgatccaaatgataaggagaagaaatacagtagtctagaagatgagcctaga
catttgcatggcccagagcactctgcaggccatgtcagcatggacaatttcagtgatatt
tctccagatagtttgaacctcctggtgagttctcaggccagtagccaggttgacctgact
tcggtaagcccctcttcagtagtttccaagcacttcttcagcaattcagaagaggagaac
ttcaccccttcttgggctcctacttggaaaagtccagatgaaaaagaactaaatattgaa
gaaaggataccaacctatctacgtaatcttggcattgaccaatcaccttcaagtatactg
actccgtttgcacccagaggtccaatcagagaggttgaattttccccgtccgagctcaga
acattgaaggggtccactgacacgttaacaaagcacgcccagctctctgaaggaggttct
ctgtctgctgtcgacatcacacagaccagctttaactcgggcaattcgactctcagcatg
tcagtagcaatgtgctcggatgctggacctgatactccagtacctactgaactctcacct
cagtattcaagatcttcgaaagacaaaccattgagtcagtgcagtactgccgcctaccac
caactagaactgcttactcttcttccagatgaaggcagcttggagtcttcagttgcccca
agattagttgagccaaggcagcaattacaagcagttgctgccgatttccactcggatgaa
gaaggtcctatgcttgtttcaaagcacgttcaagatctgatcgatagatgcgactcaagg
gatattagtagcagcctagagaagttgtctaccagtttgttggctgaggatatcggtgaa
atggaagtaaaaggagaactactttcttcaaatgcagttgcctctgaaaatgagctaaac
aaggaccaaggaaacgatcctttcattgaatccagcacgttgaaagagatccagaagctt
ttagcacaggcagagaaaatgactctgagtcagtttgatcctgtcccttctcttaccccc
tccagagaagtcactgactcttcactggcatcaattaaaaagaaggatggcattgaagat
tctcgattagtgagagatgacagcccagcgcttcaaaggctgttgtcccgggatgaaacg
ttgaccagaaagagcatgcaagaagataacgtgctaataaagactctccattcctgcaag
gacagtttaaaatcagaaagagcacttgctggcaatttacctgtcagtcaagaaactgca
gaactgcagaacagaccagcagagaaaatagctggtgaagatttcagggtagcaaaaccc
attggaaggtctgagccagagggctgcagtagtgcaaccacagataaaaacctgcttgct
cctgtggctgttacaaagagcgccacaagtagtgaatcgagcatcagaagggttttagaa
ctggaagatcctcctaccacagcaccgctggggaccagtgccactgtcctcggggactgt
gagcacggctcatctaaagctagtttagctggcagcaaggagggggatgtcattcaaggg
agtgatgacagtagcagcttagattcgctagctgcccgtgtcagaaaccttctgaaatac
gaatcccctgagatgcacgcaacacaaatcctgaagagcgtagaggaagaggagaaaaaa
gcgcgaacctgggtgaagctgaaactggctagccacccccatggctccttgccagatctg
aatgaggaggacaggaagagaatagaagaaatcaaggcagaactgcttttgagtgccagg
aaatctgcattagccaaggattcgtggggaaacagctcagacattataccaagtcagagc
cataatcagaagcactaccctgaacatttcccctctccatatagcgaacagaagcaaact
gacaaccagatgcaggatttcgaacttgagccttcagagtcatatggaagatgggtcatg
ccagtatatacaattgactcacctgattattctctatcgagtaatacacagtttaaagct
ttggataccttccaagcacaaatcccaaaccagcttcacgccctggcaactaatcccttt
gatatcagtattgagcttaccccctcgtgtaaagatgtggatgcgtggttgatgggattg
gtggatgcccctaatgcacaaacagaagaggaagtgcgttttccagctcagaagaagcta
tctgtagaaaaaccatctgcagaaattgctaaacagattacctccatcacatttgcatcc
agaaaacgttccttgtctcctgtccttggtactagccttactgaagatgctcttcatggt
gtaataccattgcaagttggatctactagcattgaaaagcagcagcttgaaaagcgacat
ctagaaacttctgagtcatgtccttcaagtccaacagccacttgcactctagctagtggt
gttaagcctactgcagaccaagacagttttcaccatgtagtcacggatgttgtcaaacct
ggagctcatctagggaaagaccaagcccaagagtctaaatccatatatcctgacccatgt
ttcagccttgtgggaactagttttgaagcagctcagacttctgctcaagatgctgttggg
ctgggcaggcttaatgccagacttcctgtggctgattgtgataagaaatttaatcaagaa
tcaaatacgttgaatgaacccgttcccataagtttttatcagcagggaaagacgagtccc
tccagccaagcccaggttacagaagatccagtttatagcccacaagctcatttgcttaaa
agccataataatttgacagagaaggaggataagcttccatttgatatattctctctccat
cacgcagatatggagacaggacatggtaatgggatacacagtccctccccagatcagatt
ttggccgccatgccggtatccccttcatctccaacaaaaaaggctttgtcttgtgtccgt
ataactctgtccccaaaatgtgctacttcagagccatgtggtaacctcagagctgaagca
gaaacaaggtttaacgacagaattaagagtgatgttcagccaacactagtaaggtctccg
aaaacttcgttagagcctgtctcaaagttaccaaccgctgaacttgttccaatggatcaa
gggtcttcatacttcccaaggccaggatctttaccacctccatctcctgtgcatcccttt
gttccaggcacaccaggactagcacacgatataaagcatgtgcccctggaaagcagccag
agagtcccctccttgagggaggcacacaccagaggtctggatacaagtggacgtaatgtg
caggatggcttcaggactctggtttctgcacagactggaaaaacaacatctgatgccatt
actcagatcacaacagaaagccctgaaaagacaacgttttcagcagagatttatgttagt
acagaagaggaggaaaaccctgccctcgtatcctctcgccagaaggcatgcagaatcccc
agccttggcgcttcatctcagaaccagattttctcatcccacaggccagctgtatgtgca
gatcagcctttactggtgccgtacaagccttctggtagcagagagatgtactacgttccc
catccaaaggaagcacccagaatatctcccgtcaggtcagagaccactattgagagctct
cactcaggatcgaatgatgctgtccctccaaaatttccagtgaacgtactgggatcaagg
gaagagagtcctccagacgtaactattaaacacaaagagggtatctacagtaagaggcct
gagcccaagctagcctggggaaaagaaaaaatggcaccacaagaatctgatacagagtct
gcaaatcctttgaaagctgtaagaacaacccattccgtcttcaagtcagcacagttctac
cttcaccatccagtgcctctgcagcatgaggattacttcctcttaaacagcgagcccttg
gaggggtaccctgatactggacccagcagacttccttccagagattgcttccagaggatg
agagctgcagaaaaggaccagtgcccacctcctctttatcgtgaagaggacaaggaagat
gaattcgcaccactagccacagtactcgattacagcaagattgaggactccaaattctgc
gcacctgcaggcaatgaagcttttcggaaggagctaataatccaaaatgacaaaaggcag
gcaggccagacgaaggccagagattatccaccacgaagcagccaaatgattggctttcaa
gtgaggcagaagaaggatctcccactgaaacagagtactgaatccactggcagcttagat
gacctctgggccaagtttttagagcgccaaaagaagcacccgctccctaatgttcggagc
aatgagctgtctttagtggaacgccttgatcgactagcgagagtcctccagaatcccgtt
cggcataccctgatgcctgcaaaggaggagagcaattttggaggaaggactaagggaagg
gaacaaaagaaaatcagactccaggacaggaacgagtctgatgctcataggaatgcattg
catgctgaggaaaggccacagaccagttacgataaaaaaaggctgaccgaatctcgaaaa
tatagggcaggagaaagaaccatcagtcgcatcaagcaaatcttggaacagcagcagtac
tcggataccttgagtgacacctcttcagagaccaagcctgccaacgaccacagcagcgtg
gcaattactaccacctctgaatcggacgtggtgtcccaaacagagacagaaatggctacc
cagactgaggtgagcagttccatttccaccattgacactgccaggctgatcagggctttt
gggcacgaaagagtgcgcgtgtcaccaagactgtcccacctgtatttcaccatcagtcag
cagaaaagtcgctctgacatttggggccagggaagcaggacaggaaagggcgtggagtat
cttaaagctacttatgctgagctgcatagaaaaagagagatccaggtagcagactgcgtt
tcattagactctgtttctacggtcagcagttcctgggggccaagctctgcgctcagtacc
aagcgccgcgcacggatgttgaacaagggcatccaagcaggagacttggagattgtgaat
agcgcaactaagaaaaacacgcgagatgttggtgtgactttccccacgccgagatctggc
caaccaaggccctgggaaccctgcagtagcgctgatggtgtttgtggggagcctgatgga
ctggtttcagatcttcagatgccactaggcaagggtagacaaaagggacacacgagcagc
ctgctcatggacaagaagaccaaaaggaacaggccacagctgccacaagtaggagtttcc
tggtttgttcctgctgaagatttaaaatctgactcgaggaaggagaacagatctggttcc
ttctctggtcctggaccatcctggtttgaacccctggccagcacaaaaccctggagagag
cctctccgagagaagaattggcaagagcagcgaggcagcagcctagttcaaccaataatc
ccagtcagagatgttgaaaacaagcccccaaggccacttgtgaaaatgacactgcaggaa
gctctcgtgttgcaccgccctgatttcatctctcgctctggcgagcgtgtgaagcgtctg
aaactcatcatggaagaaaggaagatccagagcgtgttgcagaatgagcgcgaggaactg
tttaatccccctgagaaaaggaagggctataagaatgctagttgcctgctctccaacaga
gatttccaagttagacaggaaaggaggacaattccaaagggtgaaatggtccaaagatcc
aaacgaagtaatgcgaataatgacgtttttaggaaaggtgggcttctaggagcagccaca
gacagagtagaaaaacagggacagaaaagaagaatctacgagcagctgccagaggtgcgg
aagagacgagaggaagagaaaagaaaatcggaatataattcataccggctgaaagcacag
ctttacaaaatgctcctcgtttctatgcaggaaaaggagggagatttccaccctgttctg
ggatccgtatctgaggctcattcctttaggaggaaatggatgattgattcattgtgcttt
tatggaagtaaaactgtgactgatggggagtga
DBGET
integrated database retrieval system
