Crocodylus porosus (Australian saltwater crocodile): 109322600
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Entry
109322600 CDS
T07440
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpoo04147
]
109322600 (COL18A1)
00535 Proteoglycans [BR:
cpoo00535
]
109322600 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
cpoo00536
]
109322600 (COL18A1)
Exosome [BR:
cpoo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109322600 (COL18A1)
Proteoglycans [BR:
cpoo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109322600 (COL18A1)
Glycosaminoglycan binding proteins [BR:
cpoo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109322600 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
Laminin_G_3
DUF1554
LDL
Motif
Other DBs
NCBI-GeneID:
109322600
NCBI-ProteinID:
XP_019409178
LinkDB
All DBs
Position
Unknown
AA seq
1532 aa
AA seq
DB search
MHDEIPAEVAGSLDNQLSHYVRNSNHSVSRGNTTPHIIKNADSSQSMQSIEPSDKQFGKA
VADLNRSHSDSVSNATNFVDFFPANNSDSLGFDLLTYTMQLYSNNSSGLASFFPGLTPTA
GHCLPLPASLPYCNNLGLKHFRMPNYFNHGSDMEIRASLHEWEGLLKSRCHRYLEWFYCL
LLVPGCNASIPITPPPCQGFCEALKDLCWMHLKEGRLPISCDSLPAEDDEYSCVFINVSA
ENFSTEVGLLELIGDPPPEQITKIYGPDNSPGYVFGPDANTGQVARYHLPSPFYRDFSLL
FHIQPTTNKAGVLFAITDSSQTVIYIGVKLSDAKEGKQQIIFYYTEPGSQSSYAAATFTV
SSLLNQWTRFAISVEDEEVVLFLDCEEYDRIRFERSPDEMELEDGSGLFVAQAGGADPDK
YQGVIADLKIKNDPHAAVLQCEEDEDDTEEMSGDFGSGVEEKLHSSGKERGIPTVSGLPK
PPPVTSPPIAGRPVEKVSGSSQLQTEHIKAEETPSVSTGDTVGQKGEKGEKGERGPKGDS
RTGGVPSTGGGKGEKGEKGELGVKGSAGFGYPGSKGQKGEPGAPGDPGPPGPPGPSGTIL
QHQDGSVVEHVTGPPGAVGPPGLPGKDGLPGKDGEPGDPGEDGKPGDTGPQGFPGTPGEP
GLKGEKGDPGVSVRGSPGPPGPPGPPGIPGLSSKQDKLTFIDMEGSGFAGDLESLRGPRG
PPGPPGPPGVPGLPGEPGRFGMNHTAIPGPPGLPGKDGSPGLQGPPGPPGPPGRDGLPGQ
PGFRGEKGDSGDLGLPGAPGPKGSKGETGPQGSPGETGLAGLPGPIGPRGQPGLPGPPGP
PGPGYEAGFGDMEGSGMPIVSSVPGPRGPEGPQGPPGLPGLKGDVGSSGQPGVPGQKGDP
GTPGTNGQPGLEGFPGPQGPKGDQGSPGVKGERGQDGVGLPGPPGPPGPPGEIVYASNKT
LAVLPGPEGRPGHAGFPGPVGPKGEAGSPGLQGFPGLKGEKGDPADPSGGFGVPGLPGPP
GPPGPPGSIVPIYDGNAFTEAGPPGPPGLPGYQGAPGQKGEKGDTGAPGPPGQFPYDLSQ
FGAAFRGEKGERGDSGLKGEKGEPAGGTLYGPGVVGQPGPPGPQGYPGLPGPKGDSIAGP
PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTNVVGPPGPPGPPGPPGTSGTS
ASSGLKILPSYQAMLSTAHEVPEGWLVFIVDREELYVRVRNGFRRILLEDRTVISSTALD
NEVYDKLPSIHFAHGSSPSSGSQPRVPVHPHRDYNTYATVRPWGGDDIIANHHRLPKQPS
VHQGAQHQQENLHDFYPNRRPENTPSAMHTHHDFQPALHLVALNTPLSGSMRGIRGADFQ
CFQQAREVGLTGTFRAFLSSRLQDLYSIVRRADRSSVPIVNLRDDVLFNNWESLFSGTEA
QLRGGAHILSFNGKDILRDSTWPQKSVWHGSDSKGRRLTENYCETWRTDSSVVTGQASSL
SSGKLLEQKASSCQNAFVVLCIENSFMTSSKK
NT seq
4599 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgagataccggctgaggtggcgggttccttagacaaccagctatcccattat
gttaggaattcaaaccactcagtctctcgtgggaatactacccctcacatcattaaaaat
gcagacagcagccaatcaatgcaaagcattgaaccctccgataagcagtttgggaaagca
gtagctgatttaaataggagccatagtgattctgtttctaatgcaactaattttgtggat
ttttttcctgccaataactctgattctcttgggtttgacttactaacctacactatgcaa
ctttatagcaataatagctcggggcttgcttccttctttcctggattgactccaacagct
ggccactgcttgcccttaccagccagtcttccatattgcaacaacctgggcctaaagcat
ttcagaatgccgaattatttcaatcacggcagtgacatggaaattcgggcttctttgcat
gagtgggaggggcttttaaaatctcggtgtcaccgctacttggagtggttttactgcttg
ctactggtacctgggtgtaatgcttctattccaataacacctccgccatgccagggattc
tgtgaggccctgaaagatctctgttggatgcatttgaaagaggggcgcctcccaatctca
tgtgactctctccctgcggaggacgatgagtattcttgtgtatttattaatgtttctgca
gaaaatttcagcacagaagttggactcttagagctgattggagatcccccaccagagcag
ataaccaaaatttatggccctgacaacagtcccggctatgtctttggccctgatgccaac
actggtcaagtggcccgataccacttgccaagccctttttatcgggacttttcactcctg
ttccatattcagcccacaactaacaaggccggcgtgctctttgccatcacggactcctca
cagactgttatttacatcggcgttaagctctctgatgcaaaggaagggaagcagcagatc
atcttctactacacagaaccagggtctcagagctcatacgcagctgccactttcaccgtg
tcatccctcctgaaccagtggactcgctttgctattagcgtggaggatgaggaggtggtg
ctgttcctcgactgtgaggaatatgaccggattcgttttgagcgctcccctgatgagatg
gaactggaggacggctctgggctcttcgtggcacaggctggaggggctgatccagacaaa
taccagggggtgatagcagacttgaagataaaaaatgatccccatgctgctgtacttcaa
tgtgaggaggatgaggacgatactgaggagatgtctggagatttcggaagtggagttgag
gaaaaactccactcatcaggaaaggagagggggatcccaactgtctcaggactccccaaa
cctccccctgtcacttctccccccattgctggcaggccggtggagaaagtcagtgggagc
tctcagctgcagacagagcacatcaaagcggaagaaacaccgtcagtatctacaggagac
acggttggtcaaaaaggtgaaaagggggagaaaggagaacgtggtccaaaaggagactcc
agaactggtggagttccgtccacaggtggtggcaaaggagaaaagggagaaaaaggtgaa
cttggtgttaagggaagtgcaggatttgggtatccaggctcaaagggccagaaaggcgag
ccaggtgctccaggggatcctggtcctcctggccctccagggccctctggaaccatcttg
cagcaccaggatggctctgtggtggagcatgtcactgggcctccaggagccgtgggcccc
ccagggcttcctggaaaagatggtctccctggcaaggacggcgagcctggggatcctggt
gaagacggcaagcctggtgacactgggccccagggattcccaggaactccaggggagcct
ggcctcaagggtgagaagggtgacccaggggtcagtgtgagaggatcccctggaccgcct
ggcccacctggcccacctgggataccaggactctcatctaaacaagataagctgacattc
attgacatggaagggtctgggtttgcaggtgatctggaaagtttgcggggaccccgaggc
ccaccaggtcccccaggacctcctggtgtgcctggcctgccaggagaaccaggaagattt
gggatgaaccacacagcgattccaggtccccctggcctaccaggcaaagatggaagcccc
ggactgcaaggaccacctggtcctccaggtcctccaggaagagacgggttacctggccag
ccaggattcagaggagagaagggtgattccggtgatttaggccttcctggagctcctgga
cccaagggcagtaaaggagaaactgggccacaaggatccccaggggaaacagggttggct
ggccttcctggacctattggaccccgaggacagccaggtctccctggtcctcctggacct
ccagggccaggctatgaagctggttttggtgatatggaaggctcaggcatgccaattgtt
tccagtgttcctgggccacgtggacctgaagggccacaggggccaccgggactccctgga
ctcaagggagacgttggcagttcaggtcagcctggtgtaccaggacaaaagggagatcct
ggtactccagggacaaatggtcagcctggattggagggcttcccaggacctcagggacca
aagggtgatcaaggcagcccaggggttaaaggtgaacgaggtcaagatggagttggactg
ccaggtccccctgggcccccaggacccccaggagagattgtctatgcctccaataaaaca
ttggctgttttgccaggcccagagggcagaccaggtcatgctggcttcccgggcccagtg
ggacctaaaggagaggcaggatccccagggctccaaggctttccagggctgaagggtgag
aaaggtgaccctgcagaccctagtggagggtttggcgtaccgggtcttccaggtccccca
ggccctccaggccctcctggcagcatagtgcccatctatgacggtaacgcgtttactgag
gcaggccctcctggacctcctggcttgccaggttaccagggtgccccaggacagaagggt
gagaaaggagacacaggtgccccagggcccccaggccagttcccttatgacctcagccaa
tttggtgccgcttttcggggtgaaaaaggagagcgaggggactccggcttaaaaggcgaa
aaaggcgagcctgctgggggaacactatatggaccaggcgttgttggacagccgggccct
cctggcccccagggctaccctggtcttccgggtcccaagggagacagcattgctggccca
cctggccccccaggacctcagggacctcctggcattgggtatgaggggcgacagggccct
cctggcccacctgggccccctgggcccccctccttcccaggaccccacagacaaaccaac
gtggttggccctcctggcccgccagggcctccaggacctccaggcaccagtgggacatct
gcttcctctgggctgaagatcctgccatcatatcaggccatgctgagcacagcccatgag
gtgcccgaggggtggcttgtcttcatagtggacagagaagagctgtacgtccgtgtgcga
aatggcttccggagaatcctgcttgaagatcgcactgtgatctccagcactgcgctggac
aatgaggtatatgacaagctgcccagcatccactttgcacatggcagctctccctcttct
gggtcacagccgcgtgtacctgtgcacccacaccgcgattacaacacttacgccacggtg
cggccctggggaggagatgacatcattgctaaccaccaccgcctgcccaagcagccctct
gtccaccagggagcacagcaccagcaggagaatctgcatgacttctatccaaaccgccgg
ccagagaacaccccctctgccatgcacacgcaccatgacttccagcctgctctccacctc
gtggctctgaacacccccctgagtggcagcatgcgcggcatccgcggagctgacttccag
tgcttccagcaggccagggaggtcggactgacaggtaccttccgagccttcctctcgtcc
cggctgcaggacctgtacagcatcgtgcgcagggctgaccggagctcggtgcccattgtc
aacctcagggatgacgtgctgttcaataactgggagtccctgttttcaggcacggaggcg
cagctccgaggtggtgctcacatcctctcctttaatggaaaggatatcctgagagactcc
acttggcctcagaagagcgtgtggcatggttctgactccaaggggcgtcgcctgaccgag
aactattgtgagacgtggaggactgacagcagcgtggtgacagggcaggcctcctctctg
agttcaggcaagcttctggagcagaaggcaagcagctgtcagaatgccttcgtcgtcctg
tgcattgagaacagcttcatgacctcttccaaaaaataa
DBGET
integrated database retrieval system
