Crocodylus porosus (Australian saltwater crocodile): 109322786
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Entry
109322786 CDS
T07440
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109322786 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoo03041
]
109322786 (PRPF40A)
Spliceosome [BR:
cpoo03041
]
Complex A
U1 snRNP components
U1 related factors
109322786 (PRPF40A)
Complex B
109322786 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
109322786
NCBI-ProteinID:
XP_019409534
Ensembl:
ENSCPRG00005008786
LinkDB
All DBs
Position
Unknown
AA seq
1077 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVSAASDQSPKSGRLGGRPDWP
TGKPVSLLAPLLPPRGEPEPLMPFGPSRQQLRGRLLGRCSGGSLLNPSMRPGGDRSLMMG
HPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMMMSH
MSQAAMQPTVPPGVNSMDTQAGSGSGKYLSTSSLHWKLSTMEGTTPPGTQTGHPVVCSAQ
QTTTVNSSVTEDQSKQKSVWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCP
WKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEAMIKAEENSSKPEESTPATSTAAVATE
VTNTTTITTTSAAAETTVAATATTATPAATAASESETASTTSSAAATGSVTATAAENEST
GTATADEQVQQTNATPVVQEQNAETVTNTAEEGFKQEGSADATPKKEEDDAQPVKKTYTW
NTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEK
EEKEEARSKYKEAKESFQRFLENHDKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYED
VLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQ
NMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSM
SSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFIV
EVNTTFEDFVAVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAF
KSMLKQAAPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFMHILEHECQHHHSK
NKKHSKKSKKHHRKRSRSRSVSLFSRMLCKNYSYSTYPTRIVLKSFFCLKGSESEEDDNH
SKKKRQRSESRSVSERSSSVESERSYKKTKKHKKKSKKRRHKSDSPESDAEREKDRKGER
ENEKDRSRQRSESKHKSPPKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggggactcggcggcggcggcggccacggcctcgcctcagccgctgccgttc
tcgctgccgaagccgcctcccctcatgcagctgacgccgggggacgccgtgcgccccgtc
tccgccgcctcggaccaatcgccgaagagcggccggctcggcggccgcccggattggccg
acgggcaagcctgtcagcctgctggccccgctgctcccgccccgcggggagcccgagccc
ctcatgccctttgggccctcgcggcagcagctccgggggaggctgctcggccgctgcagt
gggggcagcctgctcaacccgtcgatgaggccgggcggagaccgctccctcatgatgggt
cacccaggcatgcctcactatccacccatggggatgcaccccatgggccagagaccacca
aatatgccaccagttccacatggtatgatgcctcagatgatgcctccaatgggaggacca
ccaatggggcagatgcctggaatgatgcaatcagtgatgccaggaatgatgatgtcccat
atgtcccaagctgccatgcagccaacggtcccgccaggagtgaatagtatggatacgcaa
gcagggtctggttcaggaaaatacttaagcacatcgagtctccattggaagttaagcaca
atggaaggtacgacacctccaggaactcagaccggacatccagtagtctgttcagcccag
caaaccaccacagtcaacagttcggtaactgaagaccagtctaaacagaaatctgtatgg
actgaacataaatcacctgatggaagaacttattattataatactgaaacaaagcaatcc
acatgggagaaaccagatgatcttaaaacacctgctgagcaattattatctaaatgtcct
tggaaagagtacaaatctgattcaggaaagccttactactataattcccaaacaaaagag
tcacggtgggcaaaacctaaagaacttgaggatcttgaagcaatgattaaagcagaagaa
aacagcagcaaaccagaagaatcaactccagctacatctacagctgctgttgcaacggaa
gtaaccaatacaacaaccatcaccactacttctgcagctgctgaaactactgtagctgct
actgcaactactgccacccctgctgcaacagctgcctcagaaagtgaaactgcttctact
actagttctgcagctgctactggtagtgttactgcaactgctgcagaaaatgaaagtaca
ggtacagctacagctgatgaacaagtgcagcaaaccaatgctactcccgttgtacaggaa
cagaatgcagaaactgtcacaaacacagcagaggaaggttttaagcaggagggttcagca
gatgctactcctaaaaaagaggaggatgatgcccagccagttaaaaaaacatatacgtgg
aatacaaaagaagaagcgaaacaagcatttaaagagcttttgaaagaaaagcgtgtaccc
tccaatgcctcctgggaacaagctatgaaaatgatcattaatgatccaagatacagtgct
ttggcaaagttgagtgaaaaaaagcaagcctttaatgcttacaaggttcagacagaaaag
gaagaaaaagaagaagcgaggtcaaaatacaaagaagctaaagaatccttccagcgtttt
cttgaaaaccatgacaagatgacatctacaacaagatataaaaaagctgaacaaatgttt
ggagagatggaggtctggaatgcaatatcagagcgtgatcgtcttgaaatttatgaagac
gtgttgttcttcttatctaagaaagagaaggaacaagccaagcagttgcgaaaaaggaat
tgggaggctctaaaaaacatactggataatatggctaatgtaacttattgcaccacttgg
tcagaggctcagcaatatcttatggacaaccctacatttgcagaagatgaagaacttcag
aatatggataaagaagacgccctcatctgttttgaagaacacatcagggctctggagaaa
gaggaggaagaagaaaaacaaaagagtttgctgagggaaaggcgccgacagcgtaaaaat
agagaatcttttcagatatttttggatgaattgcatgaacatgggcagttgcattcaatg
tcttcttggatggagttgtatccaaccataagctctgatatcagattcactaatatgctt
ggccaacctggatcgactgcgcttgatcttttcaaattttatgttgaagatttgaaagca
cgctaccatgatgaaaagaagataataaaagacatcttaaaggataaaggatttatagtt
gaagtgaatacaacttttgaagactttgttgcagtcatcagttcgactaaaagagctaca
accttagatgcaggcaatatcaaactggctttcaatagtctcctggaaaaggcagaagcc
cgtgaacgtgaaagggaaaaagaggaggctcggaagatgaagcggaaggagtctgcattc
aagagtatgttgaaacaagctgcacccccgattgagttggatgctgtttgggaagatatc
agggacagatttgtgaaggaaccagcatttgaagacattactttagaatcggaaagaaaa
agaatatttaaagacttcatgcacatattagagcatgagtgtcagcatcatcattcaaag
aacaagaaacattctaaaaaatctaaaaaacatcaccgaaagcgatcacgctcccgttcg
gtaagccttttttctagaatgctatgcaaaaactactcttacagcacataccccactagg
atagtgctgaagtcctttttctgtttaaagggctcagagtctgaagaagatgataaccat
tcaaaaaagaagaggcagcgttcagaatctaggtctgtttctgagcgttcttccagtgta
gaatctgagagaagttataagaaaacaaaaaaacacaagaagaaaagcaaaaagagaaga
cacaagtctgattcaccagaatcagatgctgaacgagaaaaagacaggaaaggggagaga
gagaatgaaaaggatagaagtagacaaagatctgaatcaaagcataaatctcctcccaaa
aaacggcctggaaaagattctggtaactgggatacttccggcagtgaactgagtgaaggg
gaattggaaaaacagagaaggacccttttggaacaactggatgaagatcaatga
DBGET
integrated database retrieval system
