Crocodylus porosus (Australian saltwater crocodile): 109322807
Help
Entry
109322807 CDS
T07440
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109322807 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpoo03041
]
109322807 (SF3B1)
03036 Chromosome and associated proteins [BR:
cpoo03036
]
109322807 (SF3B1)
Spliceosome [BR:
cpoo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109322807 (SF3B1)
Complex B
109322807 (SF3B1)
Complex C
U2 SnRNP specific factors
109322807 (SF3B1)
Chromosome and associated proteins [BR:
cpoo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
109322807 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
109322807
NCBI-ProteinID:
XP_019409576
Ensembl:
ENSCPRG00005009298
UniProt:
A0A7M4EQ09
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGASSQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaggga
aagaaggctgctcttgatgaagcacaaggagtgggcctcgattccacaggatattatgat
caagagatttatggtggcagtgacagcaggtttgctggatatgtgacttctattgcagca
actgagctagaagatgatgatgatgactactcttcaacgagtttgcttgggcagaagaag
ccagggtaccatgctccagtggcattacttaatgacataccacagtcaactgaacagtat
gatccctttgctgaacaccgtccacagaagatcgctgatcgggaagatgaatacaagaaa
cataggcggatgatgatcatttcccctgagcgtcttgatccttttgcagatggagggaag
acacccgatcctaaaatgaatgctagaacatatatggatgttatgcgtgaacaacattta
acaaaagaagagagggaaattaggcagcaactagcagaaaaagctaaagctggagaactt
aaagtcgtcaatggagcctcatctcagccaccttccaaacgcaaaaggcgatgggatcaa
acagctgaccagactcctggtgccacacctaaaaaattatccagttgggatcaagctgag
actcctggacatactccttctttacggtgggatgaaacccctggtcgtgcgaagggtagc
gagactcctggagctaccccaggctcaaaaatatgggatcctactcccagtcatacacca
gcaggagctgcaacccctggacgggatacacctggccatgccacaccaggtcacggaggt
gccacttctagcgcgcgtaaaaatagatgggatgaaacccccaaaacagaaagagatact
cctggacatggaagtggatgggctgagactcctcgtacagatcgaggtggtgattcaatt
ggtgaaacgccaactccgggagcaagtaaaaggaagtcacgttgggatgaaactcctgct
agccaaatgggtggtagcactcctgttttgacacctggtaaaacaccaattggcacacca
gctatgaacatggcaactcctactcccggtcacataatgagcatgactccagaacagttg
caggcatggaggtgggagagagaaatagatgaaagaaatcggccgctgtctgacgaagag
ctggatgctatgttcccagagggctataaggttctccctcctccggctggctatgtgcct
attcgtactccagctcgtaaacttacagcaactcccacacctttgggtggtatgacgggg
ttccacatgcaaacagaagacaggaccatgaagagtgtcaatgaccaaccctctggaaat
cttccattcctaaaaccagatgatattcagtactttgataaattgctggttgatgttgat
gaatcaactctcagtccagaagaacagaaagagagaaaaataatgaaattgcttttgaaa
ataaagaatggcacacctcccatgagaaaggctgccttgcgtcagattactgataaagct
cgtgaatttggagcaggtccactgttcaatcagattttacctctgctgatgtcaccaacg
cttgaagatcaagaacgtcatttgcttgtcaaagttattgatagaatcctatacaaatta
gatgacttggtccgaccatatgtacataagattcttgtggtcattgagccgcttctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggccaaggct
gctggtctggctacaatgatctccaccatgcgacctgatattgataacatggatgaatat
gtccgaaatacaacagctcgagcctttgctgttgttgcctctgctttaggcattccttcc
ctgttgccctttctgaaagctgtatgtaagagcaaaaaatcctggcaggcaaggcatact
ggcatcaagattgtgcaacaaattgcaattcttatgggatgtgctatcttgcctcatctc
agaagtttggttgaaattattgaacatggtctggtggatgagcagcagaaagtacgtacc
atcagtgctttggctattgctgccttggctgaggcagctactccttatggtattgaatca
tttgactctgttctgaagcccttgtggaagggtatacgtcagcatagaggaaagggcttg
gctgccttcttgaaagccattggttatcttattccacttatggatgctgagtatgccaac
tactataccagagaagtaatgctgatcctgattagagagtttcagtctcctgatgaagaa
atgaaaaaaattgtgctgaaggtggtaaaacagtgttgtggtacagatggtgttgaagca
aactatattaaaacagagattctgcctccatttttcaaacacttttggcagcacagaatg
gcactggacagaagaaactacagacagttggttgataccacagtggagctggcaaacaaa
gttggagcagcagaaattatttccaggatcgtggatgatctgaaagatgaagctgaacaa
tatagaaaaatggttatggaaactattgagaagataatgggaaatctaggtgcagcagat
attgaccataaactagaagaacaacttattgatggtatcttgtatgccttccaggaacag
actactgaggattctgtgatgttgaatggatttggcacagtggttaatgctcttggcaaa
cgagttaaaccatacttaccccaaatctgcggtacagtgttgtggcgtttgaacaataaa
tcggccaaagttagacagcaggctgctgacctaatctctcgtactgccgttgtcatgaag
acttgccaagaggaaaaactgatgggacacttaggtgttgtgttgtatgagtatctgggt
gaagaatatccagaagtcttgggcagcatactaggagcacttaaagccattgtgaatgta
ataggtatgcacaagatgacaccaccaatcaaagacctcctgccaaggctcacacctatc
ttgaagaacagacacgagaaagtacaggagaactgtattgacctagttggacgtatcgcg
gacaggggagcagaatacgtttccgcaagggaatggatgaggatttgttttgaactgctc
gaattgttaaaagctcacaaaaaggctatccgaagagccacagtaaacacttttggctat
attgcaaaagcgatcggacctcatgatgtactggctacattgctaaataacttgaaagta
caggaaagacagaacagagtatgtactacggtagcaattgctattgtggctgaaacttgc
tcacctttcacagtactgcctgcattgatgaatgaatacagggttccagaactgaatgtc
cagaatggtgtattaaaatctctttccttcctgtttgaatacattggcgagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagagaccttgtg
cacagacaaacagccagtgcagttgtgcagcatatgtcccttggggtatatggatttggc
tgtgaagattctctgaatcacttgttaaattatgtgtggcccaatgtgtttgagacatca
cctcacgtcattcaggcagtaatgggagcactggagggcctgagagttgctattgggccg
tgtcgaatgttgcagtattgtttacagggtttatttcaccctgcccggaaagtcagagat
gtttattggaagatttataattcaatctatattggctctcaggatgctttgatagcacat
tatccacgaatctacaatgacgagaaaaacacctacattcgttatgaacttgactacatc
ttataa
DBGET
integrated database retrieval system
