Crocodylus porosus (Australian saltwater crocodile): 109323229
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Entry
109323229 CDS
T07440
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo04510
Focal adhesion
cpoo04512
ECM-receptor interaction
cpoo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109323229
04518 Integrin signaling
109323229
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109323229
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpoo00536
]
109323229
Glycosaminoglycan binding proteins [BR:
cpoo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109323229
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109323229
NCBI-ProteinID:
XP_019410234
LinkDB
All DBs
Position
Unknown
AA seq
1611 aa
AA seq
DB search
MFSLMNSRTLVILTVTHVLLLAVVRCQEEDIQEAGSCVQDGQRYSDKDVWKPEPCRICVC
DTGTILCDDIICEEMRDCPSPEIPFGECCPVCPTDQPAASGQPGPKGQKGEPGDIKDVVG
PRGPPGPQGPSGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPPGSPGPQGFQGNPGEPGESGAAG
PMGPRGPPGPPGKPGDDGESGKPGKSGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG
AKGEAGAPGAKGETGSAGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGGPGFPGAPGSKGEAGPTGARGPEGGQGPRGESGTPGSPGPAGAPGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAG
PQGAPGPAGEEGKRGARGEPGAAGPHGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAG
LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGLQG
PRGLPGTPGTDGPKGATGPGGPQGAQGPPGLQGMPGERGAAGIAGPKGDRGDIGEKGPEG
APGKDGSRGLTGPIGPPGPSGPNGEKVRTQGRGKHWGSGWSFRGEGCFLLTLSVPLQGER
GEPGAPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK
GGRGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGASGKDGPKGARGDAGPSGRAGDP
GLQGPPGPPGEKGESGDDGAPGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGAT
GFPGAAGRVGPPGPNGNPGPPGPPGASGKDGPKGARGDAGPSGRAGDPGLQGPPGPPGEK
GESGDDGAPGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDR
GPPGPVGPPGLTGPPGETGREGSPGSDGPPGRDGAAGVKGDRGETGAIGAPGAPGAPGAP
GPVGPTGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFT
GLQGLPGPPGPSGDQGATGPGGPAGPRGPAGPVGPSGKDGSNGMPGPIGPPGPRGRSGEP
GPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADQASTGLRQHDAEVD
ATLKALNNQIESIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTLDAIKVFCN
MDTGETCVYPNPASIPQKNWWTSKTKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMT
FLRLLSTEGSQNITYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALED
GCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGANQEFGVDIGPVCFL
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcttgatgaattcaaggactcttgtcattctcacggtcacccacgtcctttta
ttagcagttgtcagatgccaggaggaggatatccaggaggcagggagctgtgtgcaggat
gggcagaggtatagcgataaggatgtgtggaagcccgagccgtgccggatctgtgtgtgt
gacacaggcacgatcttgtgtgacgacataatctgcgaagagatgagagactgtcccagc
cccgagatccccttcggagaatgctgtcctgtctgccccactgaccagcctgccgccagc
gggcaacctggccccaagggacaaaaaggtgaacccggggatattaaagatgtggtagga
ccacgggggccccctggaccacagggaccttcaggcgaacaaggacaacgaggagatcgc
ggcgagaagggagaaaagggtgctcctggcccccggggtagagatggtgaacctggtaca
cctggaaaccctggaccccctggacctccaggtcccccaggaccccctggccttggtgga
aactttgctgctcagatggccggaggttttgacgagaaggccggtggtgctcagatgggg
gtgatgcagggcccgatgggacccatgggcccgcggggaccacccggacctcccggatca
cctggcccgcaaggctttcaaggcaaccccggggaacctggagaatccggcgctgctggc
ccaatgggtccccgaggaccacccggaccccctgggaaacccggtgatgacggtgaatca
ggcaagcctggcaaatctggtgagcgtggatcccccggcccccagggcgctcgaggcttc
cccgggacccctggcctgcctggagtcaaagggcacaggggctaccctggcttggatgga
gccaagggagaagcaggggcccccggcgccaagggcgaaacaggatcagctggtgagaac
ggctcccctggtcccatgggtccccgcggcctgcccggcgagagaggacgtcccggcccc
tctggtgctgctggtgctcgtggcaacgacggcctccccggccccgccggcccccctgga
cctgtcggcccgtctggaggtccaggtttcccaggcgcccccggctctaagggtgaagct
gggcccactggtgctcgtggtcctgagggtggccagggcccccggggagaatccggcacc
cccggctctcctggacctgctggagcccccgggaaccccgggaccgatggcatccccgga
gcgaaaggatcggctggcgctcctgggatcgctggtgcccctggcttccctggaccccgt
gggcctcccgggcctcaaggagctacaggacctctgggtcccaaaggtcagacgggtgaa
cctggcatcgcgggcttcaagggcgagcagggccccaaaggcgaaacgggccccgcggga
ccccagggagctcccggcccagctggcgaggaaggcaagagaggcgcccgcggtgaaccg
ggtgctgctggaccccacgggccacctggagagagaggtgctcccggaaaccgtggtttc
cccggtcaggatggtctcgctggacccaagggtgccccaggcgagcgtggccccgctggc
ctggccggacccaagggagctaatggtgaccccggccgtcctggagagcccggtctgccc
ggcgccaggggtctcactggccgtcctggcgatgctggtcctcaaggcaaagttggcccc
acaggtgcccctggtgaggatggccggcctggcccccctggcccacagggtgcccgtggc
cagcctggcgtgatgggcttccctggccccaaaggtgctaatggcgaagccggcaaagct
ggcgagaaggggctgcctggtgcccccggcctgaggggtctgcctggaaaggatggtgag
acaggagccgccggtccccctggacctgccgggcctgcaggagagagaggcgagcaaggt
gctcccgggccctccggcttccagggactgcctggccccccaggccctcccggcgaaggc
ggcaagcccggtgatcagggcgtccccggagaagctggcacccccggcctggtcggcccc
agaggtgaacgcggcttcccaggagaacggggttccccaggctctcaaggtctgcagggc
cctcgcgggctcccaggcacacccggcacggatgggcccaagggtgcgaccggtccaggt
ggcccacaaggcgcccagggcccacccggcctgcaggggatgcctggagagagaggagca
gctggcatcgctggaccaaagggagacaggggagacatcggtgagaaaggtcctgaaggt
gcccccggcaaagacggctcacgaggtctgacaggtcccatcggtccccctggcccttca
ggccccaacggcgagaaggtgagaacccagggtagaggcaaacactgggggagtgggtgg
agcttcaggggagagggttgtttcctcctgaccttgtctgttcccttgcagggtgagcgt
ggtgagccgggtgctcctggccctgctggattcgctggaccccctggtgccgatggccag
cccggcgcaaagggtgagcaaggagaagccggtcagaagggtgacgccggtgccccaggt
ccacagggtccatctggtgctcctggcccacagggtccaactggtgtgactggtcctaaa
ggaggtcgcggtgcccagggccccccaggagccactggatttcctggggctgccggacga
gtcggaccgcccggcccgaacggtaacccaggcccccctggcccacccggcgcttctggc
aaagatggtcccaaaggtgcccgtggtgacgcaggtccatctggtcgtgctggcgacccc
ggtctccaaggtcctcccggtccccctggtgagaagggcgagtccggtgatgacggtgct
cctggtcccgatggtccccccggtcctcaaggcttggcagggcagcgaggtattgtgggt
cttcctggccagcgtggtgagagaggtttccccggcctgcctgggccttcgggagccact
ggatttcctggggctgccggacgagtcggaccgcccggcccgaacggtaacccaggcccc
cctggcccacccggcgcttctggcaaagatggtcccaaaggtgcccgtggtgacgcaggt
ccatctggtcgtgctggcgaccccggtctccaaggtcctcccggtccccctggtgagaag
ggcgagtccggtgatgacggtgctcctggtcccgatggtccccccggtcctcaaggcttg
gcagggcagcgaggtattgtgggtcttcctggccagcgtggtgagagaggtttccccggc
ctgcctgggccttcgggtgagcccggtaaacaaggagctcctggatcttctggtgaccga
ggtccacctggtcccgtgggtccccctggtctgactggtccccctggtgaaactggacgt
gagggcagccctggatctgatggtcccccaggccgagacggcgcagctggagtgaagggt
gatcgcggtgaaacaggtgccattggcgctcccggtgctcctggcgctcctggtgctcca
ggtcccgtcggtccaactggcaaacaaggagaccgaggagaagcaggtgctcaaggtcct
atgggcccctccggtcctgctggcgcccggggcatgccgggtcctcaaggtccacgcggt
gacaagggtgaagctggagaggctggcgaaagagggctgaagggtcaccgcggcttcacc
ggcctgcagggcctgcctggaccccctggtccttctggagaccaaggtgctaccggcccc
ggcggccctgctgggcccaggggtcctgccggccctgttggcccctctggcaaagacggc
tccaatggcatgcccggccccatcggtcctcccggcccccgcgggcgtagcggcgaaccc
ggtcctgctggtcctcctggaaaccctggcccccctggccctcctggccccccaggcact
ggtatcgatatgtcagcctttgctggcctgggccagaccgagaagggccccgaccccatc
cggtacatgcgcgcggaccaggcctcgaccggtctgcggcagcatgacgctgaggtggat
gccacgctgaaggccctcaacaaccagatcgagagcatccgcagtccggagggctccaag
aagaacccggcccgcacctgccgcgacctcaagctctgccaccctgactggaagagcggt
gactactggatcgacccgaaccagggctgcaccttggatgccattaaagtcttctgtaac
atggacactggtgagacctgcgtctaccccaaccctgccagcatcccccagaagaactgg
tggaccagcaagaccaaggagaagaaacacatctggtttggagagaccatcaatgggggc
ttccacttcagctatggtgacgacaacctggctcccaacacagccaacatccagatgacc
ttcctgcgcctcctgtccactgaaggctcccagaacatcacctaccactgcaagaacagc
atcgcctacatggacgaggcctccggcaacctgaagaaagccatcctgatccaaggctcc
aatgacgtcgagatccgggcagagggcaacagcaggttcacgtacagtgccttggaggac
ggctgcacgaaacacaccggcaaatggggcaagacagttatcgaataccgatcacagaaa
acctcgcgcctgcccatcgttgacattgctcctatggacattggtggagccaatcaggaa
tttggtgttgacatcggtccagtctgcttcttgtaa
DBGET
integrated database retrieval system
