Crocodylus porosus (Australian saltwater crocodile): 109323424
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Entry
109323424 CDS
T07440
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
109323424 (PTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
Patched
DUF3238
Motif
Other DBs
NCBI-GeneID:
109323424
NCBI-ProteinID:
XP_019410507
Ensembl:
ENSCPRG00005010014
UniProt:
A0A7M4ESQ9
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
MASAGNISEPESSGGGAGGGCRDPEGPEGSGSRRRRRTGGTRRAAAPELDCLQRPSYCDA
AFALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRA
ANLETNVEELWVEVGGRVSQELNYTRHKIGEEAMFNPQLMIQTPQEEGANVLTTEALKQH
LESALQASRVHVYMYNRQWKLEHLCYKSGELITEAGYMDQIIEYLYPCLIITPLDCFWEG
AKLQSGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPCLN
PADPDCPVTAPNKNSTKPLDVALVLSGGCYGLSKKYMHWQEELIIGGTVKNSSGKLVSAQ
ALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNSTQK
VLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVA
LSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTG
ECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSM
DLYRREDRRLDIFCCFTSPCASRVIQIEPQAYADNNDNARYSPPPPYSRHSFAQETQITM
QSTVQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSES
NMHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKIVVIFLFLGLLGLSLYGTTRVKDGLDLT
DIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNTQHLLYELHKSFSNVTYVLLEENK
QLPKMWLHYFRDWLQGLQDAFDSDWETGKITYNNYKNGSDDAVLAYKLLVQTGNRDKPID
VSQLTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPE
TRLRIPAAEPIEYSQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGISSYPNGYPFLFW
EQYIGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKL
SAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVL
MLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSLFGPYPEVSPTNGRNRLPTPSP
EPPPSIVRFALPPGQNNGSDSSDSEYSSQTTMSGLSEELHQYEPTQGSGAPIHQVRVEAT
ENPVFARSTVVQPENKHHQSNPRLQTNPEAGSQQTWHQNRQPKRESVEGLRPPPYRPRRD
AFEISTEGHSGPYNKDRLGHRARSHNIRNPAFTAMGASVPAYCQPITTVTASASVTVAVH
PAVHSHNSRGGGFPSYEGYQETDHGPFEDPHVPFNVRCERRNSKVEVIELQDVECEERTH
GNGSD
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctggtaacatttcggagccggagagcagcggcggcggggctggcggcggc
tgcagggaccccgaggggccggaggggagcggcagcaggaggcggaggaggaccgggggg
accagacgcgctgcggcgcccgagctggactgtctgcagcggccgagctactgcgatgca
gctttcgccttggagcagatctcaaaggggaaggcgactggaagaaaagcaccgctgtgg
ctaagagcgaagtttcagagacttttattcaaactgggctgttacattcaaaaaaactgc
ggcaagtttttggttgtcggcctcctcatctttggggctttcgctgtaggattaagggca
gctaatctcgagaccaacgtggaggagctctgggtggaagttggtggacgagtcagtcag
gagttaaattacacacgccacaagattggagaagaggccatgtttaatccccagctcatg
attcagacaccacaggaagagggtgctaatgtattaacaacagaagcactcaaacagcac
cttgaatctgcacttcaagccagcagggtacacgtctatatgtacaacaggcaatggaaa
ttggaacatttatgttataaatcaggagaacttatcacagaagcaggttacatggaccag
attatagaatatctttacccttgtttaattatcactcctttggactgcttttgggagggg
gcaaagttacagtcaggaactgcgtatctactaggaaagcctcctttgcagtggataaac
tttgaccccttagaatttttggaagagttaaagaaaataaactatcaagtagagagctgg
gaggaaatgctgaataaagcagaggttggtcatggttacatggatcgaccttgcctgaat
cctgctgatcctgattgcccggtaacagcccccaataaaaattcaaccaaacctcttgat
gtggcccttgttttaagtggtggatgctatggattgtcaaaaaagtacatgcactggcag
gaggagttgattataggtggtacagtcaagaacagttctggaaagcttgtcagtgcccag
gctttgcagaccatgtttcagttaatgactccaaagcaaatgtatgagcacttcaagggc
tatgagtatgtttcacatatcaactggaatgaggacaaggcagcagcaattctggaagcc
tggcagaggatgtatgttgaggttgttcatcaaagtgtcgcacaaaattctactcagaag
gtgctttcctttacaacaactactctggatgacatcctaaaatcattttctgacgtcagt
gttatcagagttgccagtggctacttattaatgcttgcctatgcctgtttaaccatgctg
cggtgggactgtgccaagtcccagggtgccgtggggctggcaggagtcttgttggttgca
ctctcagtggctgcaggattgggcctgtgttcattgattggaatttcctttaatgctgcc
acaactcaggttttgccttttcttgcccttggagttggtgtagatgacgttttccttctg
gcacatgcatttagtgaaacagggcagaataagagaattccatttgaggacagaacaggt
gaatgtttgaagcggacaggagcaagcgtggcccttacatctattagtaatgttactgca
ttctttatggctgccttaatccctattcctgctttacgggcattttcactccaagctgca
gttgttgtagtattcaacttcgccatggttctgctaatttttcctgctattctgagcatg
gacctgtaccgtcgggaggacaggagattggatatattctgctgctttacaagtccatgt
gctagtagagtgattcagattgagcctcaagcatatgcagataacaatgacaatgctcgc
tacagcccaccgccaccctacagcaggcacagttttgcacaagaaactcagattacaatg
cagtccacagtgcagttacgcacagaatatgaccctcatacacaggtgtactataccaca
gcagagcctcgctcagaaatatctgtgcaaccagtcacggtaacacaggataacctcagc
tgccagagcccagaaagcacaagctcaacgagggatttgctttcccaattctcagaatct
aacatgcattgtctggagccaccctgtactaaatggacactctcatcttttgctgaaaag
cactatgctcccttcctgctaaaaccaaaagccaagattgtggttattttcctttttctg
ggtttacttggactcagtctttacggaactaccagagtgaaagatggattggacctcaca
gacatcgtaccacgagaaacccgggaatatgactttattgccgcacagttcaagtacttc
tctttctacaacatgtatatagtgacccagaaagcagactatcccaatacccagcactta
ctttatgaacttcataaaagtttcagcaacgtgacatatgttttgttggaagaaaacaag
cagcttccaaaaatgtggttgcattactttcgagactggctgcaaggacttcaggatgca
tttgacagtgactgggaaactgggaaaatcacatataacaattataaaaatggatctgac
gatgctgttctggcttacaaacttctggtgcaaacaggcaaccgagataaacccattgat
gtcagtcagttgactaaacagcgtctggtggatgcagatgggatcattaacccaaatgct
ttctacatctacctgacagcctgggttagcaatgaccccgtggcctatgctgcctcacaa
gccaacatccggcctcaccgtccagaatgggtccatgacaaagcagactatatgccagaa
acaaggctgagaattccagcagctgagcccattgaatattctcagtttcctttctacctc
aatggattgcgtgaaacttctgactttgtggaagctattgagaaagtgagagctatctgt
aataactataccagcctggggatctccagctacccaaacggatacccatttcttttttgg
gaacagtacattgggcttcgccactggcttctcttgtccattagtgtggttttggcttgc
acatttctggtgtgtgccctcttcctcctaaacccctggacagctgggatcattgtggtg
gtgctggctctgatgacagtggaactgtttggcatgatgggtctcattggaataaagctg
agtgcagtgcctgtagttatcctgattgcctctgttggcataggtgtggaattcacggtt
cacgttgctttggcatttttaactgccataggagacaagaaccgcagggctgtccttgca
ttggaacatatgtttgcaccagtgctggatggagcagtgtctactctgcttggagtgtta
atgcttgcaggatctgagtttgattttattgtcaggtatttctttgctgttttggcaatc
ctaacaattctgggagttctaaatggattggtgctgcttccagttctactttccctcttt
ggaccatatcctgaggtttctccaaccaatggacggaacagattacctacaccatctcct
gagccaccccctagcattgtaaggtttgcactgccacctggacaaaataatggatcagat
tcttctgattctgagtacagttctcaaaccaccatgtcaggactgagtgaggagctccat
cagtatgagcctactcagggctctggtgcaccaatccatcaagtaagagtggaagcaact
gagaatcctgtctttgccagatccacggtggttcagccagagaacaagcatcatcagtca
aatccaagattacaaactaacccagaagctgggtcccagcagacgtggcatcaaaacaga
caacccaaaagagaatcagtggaaggactgcgaccacccccatacaggccacgcagggat
gcttttgaaatttctactgaagggcattctggaccttacaataaagaccgcttgggccac
agggctcgttctcataacattagaaacccagcatttactgccatgggtgcttcagtgcca
gcatactgccagcctatcactactgtgactgcctcagcttcagttactgttgctgtacac
cctgctgtgcacagccataactctcgtggaggaggctttccatcctatgagggataccag
gaaaccgaccatggaccatttgaggacccccacgtgccttttaatgtacggtgtgagagg
agaaactctaaagtagaagtcatagaattgcaagacgttgaatgtgaagaaaggacacat
ggcaacggctcagattaa
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