Crocodylus porosus (Australian saltwater crocodile): 109323818
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Entry
109323818 CDS
T07440
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109323818 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpoo03021
]
109323818 (TAF5)
03036 Chromosome and associated proteins [BR:
cpoo03036
]
109323818 (TAF5)
Transcription machinery [BR:
cpoo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109323818 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
109323818 (TAF5)
Chromosome and associated proteins [BR:
cpoo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109323818 (TAF5)
STAGA complex
109323818 (TAF5)
TFTC complex
109323818 (TAF5)
SAGA complex
109323818 (TAF5)
SLIK complex
109323818 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_SPT8
Beta-prop_Nup120_160
CDK5RAP3
PEP5_VPS11_N
WD40_like
RAB3GAP2_N
Cytochrom_D1
eIF2A
VPS8_N
VID27
Motif
Other DBs
NCBI-GeneID:
109323818
NCBI-ProteinID:
XP_019411027
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MAVGGIAVEDQPDVSAVLSAYNQQGDPALYEEYYSGLKHFIECSLDCHRAELSQLFYPLF
VHMYLELVYNQHESEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSK
FVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAK
REANKAKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSVGSKSKKQDPNAPPQ
NRIPLPELKDSDKLDKAMNMKEATKRVRLGPDSLPSICFYTFLNAYQGLTAVDITDDSSM
IVGGFADSTVRVWSVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSG
PVYGTSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGG
HDRVARLWATDHYQPLRIFAGHLADVTCSRFHPNSNYIATGSADRTVRLWDVLNGNCVRI
FTGHKGPIHSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGE
ILASGSMDNTVKLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMSKSTPVIHLH
FTRRNLLLAAGAYSPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcggttggaggtattgctgtagaagatcagccggatgtgagcgcagtgttgtctgcc
tacaatcagcagggcgacccagcactgtatgaggaatactacagcggactgaaacacttc
attgagtgctccctagactgtcaccgggccgaattatcccagttgttttatccgctcttt
gtgcacatgtatttggaattggtctacaatcaacatgagagtgaagcaaagtctttcttt
gagaagtttcatggagatcaggagtgttattaccaagatgacctgcgtgtgttatccagc
ttaaccaaaaaggaacacatgaaagggaatgagaccatgctggatttccgaacaagcaaa
tttgtgctgcgcatttcccgtgactcttaccagctcttgaagagacacctgcaggaaaag
cagaacaatcagatctggaacattgttcaggagcatctctacattgacatctttgatgga
atgccccgcagcaaacagcagatagatgctatggtgggaagcttggctggagaggcaaaa
cgagaggcaaataaagcaaaggttttttttggcttattaaaagagccagaaattgaagtc
cctttggatgatgaagatgaagaaggggagaatgaggaaggaaaaccaaaaaagaaaaaa
ccaaaaaaagatagtgtaggatcaaaaagtaaaaaacaagacccgaatgctcctccacag
aacagaattcctcttcctgaactgaaagactctgacaagctggataaagcaatgaacatg
aaggaagccacaaagcgtgtacgtcttggcccagacagcttgccttctatctgtttctac
acattccttaatgcttaccagggtcttactgcagtggatatcacagatgactctagcatg
attgtaggaggctttgctgactccactgtcagagtgtggtctgtgacaccaaaaaagcta
cgcagtgtaaaaacagcagcagatctcagtctcatagacaaagaatcagatgatgtcttg
gaaaggattatggatgagaagacagcaagtgagctgaagattttatatggtcacagtgga
cctgtctatggcaccagcttcagtcctgatcggaactacctgttatcctcttcagaagat
ggcactgtgcgactgtggagtctgcaaacatttacttgcctggtgggatataaaggacac
aattatccagtatgggatacacagttctctccctatgggtattacttcgtatctggtgga
catgacagagtggctcggctctgggcaacggatcactatcagcctttgcgtatatttgct
ggccaccttgctgatgtcacatgtagtcggtttcatcccaactccaactatattgctacg
ggctcagcagacagaactgtgcgcctctgggatgttctgaatgggaactgtgtgaggatc
ttcactggacataagggaccaattcattcgctggcattttcccctaatggaagattcctg
gccactggagcaacagatggaagagtgctcctctgggatattggccatggtttgatggtg
ggagagttgaaagggcacaccgacaccatctatgcactcagattcagtagagatggggag
attttagcatcaggctctatggataacacagtcaaactgtgggacgctgtgaaagcattt
gaagacttagaaactgatgattttacaacagccacaggacacataaatctgcctgaaaac
tcacaggacttgctactgggtacttacatgagcaaatcaaccccagtcatacaccttcat
tttacacggagaaacttgctgctggctgctggagcgtacagcccacaataa
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integrated database retrieval system
