Crocodylus porosus (Australian saltwater crocodile): 109324230
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Entry
109324230 CDS
T07440
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109324230 (COL17A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Proteasome
TSC22
Motif
Other DBs
NCBI-GeneID:
109324230
NCBI-ProteinID:
XP_019411725
LinkDB
All DBs
Position
Unknown
AA seq
1502 aa
AA seq
DB search
MDSLTKKTKQDGSEVTERFITETVTTRLTSLPPKGGSSSGIKTSAHGGGSGVEKRTYTHG
SSYVTSSGSGRMNSSSSSSGYRQAQSPSSTLTKSPASTFERKTYVTRHATYEGSSSANSS
PEFPRKELASSATRGRSQSRESEIRVRLQSASPSTRWTELDDVKRLVKGSRSASCSPTRS
PSSTLPIPKKAVMETKMVTESSQSVSGTYDTTILNAALPSYMWSSTLPAGTSLGGYHNNM
AQSSSLINAMSHSTGSVFGVPNNLAPSNPSLNAGLSTSSTVFGVQNNLVPPPAVMTHSAT
TASTVYGVKNSSSQSNAAATTGVATATAGSRLNSQSDDVLRKDCKFLLLEKDNIPAKKEM
ELLIMTKDSGKVFTASSTGLNGGFLEDTLKKEKQGVSSSYAADSYLKSEGNGDLKSVSTK
DKATYAEIHGDGGGGGIGAAPAWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEEV
RKLKARVAALEESKLSYMTENAILQYRQGLGKSSAEYQHGLNDFIWMAVKGRLDEEKKNG
FWRGEPGPKGDMGMQGPKGDQGLPGIPGLIGHPGPEGPKGQKGSVGEPGMEGPMGQRGRE
GLPGPRGEPGPPGFGEKGDRGSVGEPGLPGSPGAPGSVGPKGMTGSPGPHGPPGPPGLQG
FRGEAGLPGPKGDKGAAGPPGPKGDQGEKGPRGLTGEQGARGLPGSAGEPGAKGSVGPAG
PDGLQGPRGEQGLMGLPGIRGPPGPPGDSGQPGLTGPPGPPGLPGNPGQPGTKGEPGAPG
RIINGGDSSTIALPGTPGPPGPAGPQGPPGAPGPAGPAGLPGQQGPRGEAGFTSETIVET
IKAEVASQVLASAGERLGLPGPPGPPGPPGASIQGPAGPRGPPGEGLPGPRGPPGEPGSF
VPTSETFFAGPPGPPGPPGPKGEQGEQGPRGFTGEPGQPGLPGYSSGVDIGMQGPPGPPG
PKGDKGDAGIPGAPGIPGLGYVDEYSRQGQGPPGPPGPPGPPGPVGGSMQEVQQYVAEYL
QSDSMRHYLIGPQGPPGPPGQPGIIITGSGDTLDYAELAQRVMAYIQSYGYESTALSTLL
KTSFSSEDLLALLQKKEVRQYLVGLQGSSGENSLAVSLDYGDLARRVINYLTSSGISIGL
PGPPGPPGPPGLSGTSYDEITAWLQDSRFNGIVGPPGPPGPPGLQGPAGRSGSSLEEVVS
YLQSIGYTSNSGLPGPPGPPGPPGPPTFSGTDVLSYASVAQNDEFRSELIKFITSDGIRS
YISGPPGPPGPRGPPGPKGDSGIMAGSVSTSYRGSLGTDGSYGGSLGTGGAYRGSLDTGG
SYDGSLATGGSRGSSMGGAGSYGGLMGAEGLQEGSLRTEESQGTSSLRGSYSESFTGPLD
FNELALRVSESIQSRGLLQDLMTYSVQGPPGPPGPPGVSKVFASYGNVTADLMDFFRTYG
TIPGPPGAKGDMGHPGPKGERGPMGPPGRQGPRGPKGEKGEKGEQVYVGRRKRRSVGSWG
LK
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atggattccctaacaaagaaaaccaaacaagacggatctgaagtcaccgaaagatttatt
acagagactgtaaccacaagactgacatccttaccaccaaaaggagggagcagcagtggg
atcaaaacatcagcccatggcggaggaagtggagtagaaaagaggacttacacccatggc
agcagctatgtgacttcaagtggaagtggtagaatgaattcttcctcctcatcttccggc
tacaggcaggcacagtctcccagctctactctcaccaaatcacctgcctcaacctttgaa
agaaaaacctatgtcactcgccatgcaacatatgaagggagctccagtgcaaattcatct
ccagaattccctagaaaggagttggcatcttctgcaactagaggacgaagtcaaagccga
gagagtgaaatccgagtacggttacagagcgcttctccctcaaccagatggaccgagctg
gatgatgtgaagcgtctagtgaaaggaagtcgttcagccagctgcagtcccactcgttca
ccatccagcactctcccgatccctaagaaagctgtgatggagacgaagatggtaacagag
agttcccagtcagtgtcagggacctatgatacaactatcctgaatgctgccctcccctca
tacatgtggtcctccaccctgccggcagggacttcccttggtggctaccataacaacatg
gcccagagctcttccctaatcaatgccatgtcccattctacaggatcagtgtttggagtc
cctaataatctggctcccagcaatcccagtctgaatgcagggctgagcacatcctcaaca
gtgtttggtgttcaaaacaacctggttccaccccctgcagtcatgacccacagtgcaacc
acagcctctacagtatatggtgtgaagaacagttcttctcagagcaatgctgcagctact
actggtgtggctactgcaactgctggcagcaggctgaactcccaaagtgatgacgttttg
cgcaaagactgcaagttcctgctcttggagaaggataatatccctgccaagaaggagatg
gagctcttgatcatgaccaaggacagcgggaaggtttttactgcttccagcactgggctc
aatggaggcttcttagaagacaccttgaagaaagaaaaacaaggtgtttcttcttcttat
gctgcagactcctatctgaaatctgaaggaaatggagatctaaaatcagtgtcaacaaag
gacaaagcaacctatgctgaaatacatggtgatggtggagggggagggattggagcggct
ccagcctggtgtccctgtggttcctgttgtagctggtggaagtggcttctaggtctgctc
ctggcctggttgcttctccttggattgctctttggactcattgcattggcggaagaagtg
aggaagctgaaagctcgtgtggcagccctggaagaaagtaaattgagctacatgacagaa
aatgctattttgcagtacaggcaggggctaggtaaaagctctgctgaatatcaacatggt
cttaatgatttcatctggatggctgtgaagggtagactggatgaagaaaagaaaaatggc
ttctggagaggggaacctggcccaaaaggtgatatgggaatgcaaggtcccaaaggagac
caaggacttcctggtataccaggtctgattggacacccaggaccagaggggccaaaggga
cagaaaggcagtgtgggtgaacctggcatggaaggacccatggggcaaagagggcgagaa
gggcttccagggcctcgtggggagcctggaccacctggatttggcgagaaaggagacaga
ggttctgtcggtgagccaggacttccagggtcacctggtgccccaggttctgttggtccc
aaaggtatgacaggttctccaggcccacatggtcctccaggtcctccaggcctccaggga
tttagaggtgaagcaggtctcccaggtcctaaaggtgacaaaggagctgcgggaccacct
ggacccaaaggtgatcaaggtgaaaaaggtcctcgtggtctgacaggtgaacaaggagcc
agaggattgcctggttctgcaggagaaccaggagctaaaggttcagtaggtcctgctggt
cctgatggactccaaggcccaagaggtgaacaaggtctcatgggattgccaggaatacga
ggcccacctggaccccccggagattcaggacagccaggtctcacaggacctccaggacct
ccaggccttccaggcaacccaggtcaaccaggaactaaaggtgaacctggagctccaggc
agaattatcaatggaggggattcctcaactattgcccttcctggcaccccagggcctcca
ggcccagctggaccccaaggcccgccaggtgccccaggtcctgctggaccagctggtctc
cctggacagcaaggtccacgtggtgaggcagggttcacaagtgaaaccattgtggaaact
atcaaagcagaagttgcatctcaagtattggcaagtgcaggagaacgattagggcttccc
ggtcctccaggccctcctggccccccaggtgcttctattcagggaccagctggacctcgt
ggtcctccaggagaaggactccccggcccacggggcccaccaggagaaccagggtctttt
gtgcccacgtcagaaacattcttcgcaggcccacccggcccaccaggcccaccaggacca
aagggagaacagggtgaacaggggccacgtggattcacaggtgaaccaggtcagcctggc
cttccaggatactcttcaggtgtggatattggtatgcagggacctccaggcccacctgga
cccaaaggagacaaaggtgatgctggtatcccaggagctccgggcattcctggactgggt
tatgtagatgaatattcaagacaaggtcaaggtcctcctggtcctcctggcccaccaggt
cccccaggccctgttggaggctcaatgcaagaggttcaacagtatgttgccgagtacctg
cagagtgacagcatgaggcattatctgattggacctcagggcccaccgggacccccagga
caaccgggaatcatcatcactggtagtggagacaccttggactatgcagagctggcccag
cgggttatggcctacatacaaagttacggctatgagtccactgctttgtccaccttatta
aaaacttccttttcttctgaagatctcctggccttgctgcagaaaaaagaagttcgtcag
tatctagtgggacttcagggttcctcaggagaaaacagcttggcagtgtccctggactac
ggtgatttggccaggcgggttatcaactacttgacaagctctgggatcagcattgggctt
cctggaccaccaggcccgccagggcccccaggattgtctggcacctcttatgatgagatt
acggcttggctccaagactccaggtttaatggcatcgttggacctccaggccccccaggt
ccgccaggacttcaagggcctgcaggccgctcgggcagctcgctcgaggaagtcgtcagc
tacctacaaagcataggatacacctccaattctggactcccgggaccaccaggacctcca
ggacccccgggtcccccgactttttctgggactgacgtcctttcctacgctagtgttgct
cagaatgatgaattcaggagtgagctgatcaaattcataaccagtgacggcattcgaagc
tacatctccgggcctcctgggcctccagggccacggggaccgcctgggccaaaaggagat
agcggcatcatggctgggtctgtatctacatcatacaggggatccctgggcactgatgga
tcatatggaggatccttgggcactggtggagcatacagaggatccctggatacaggtgga
tcctatgatgggtccctggccaccggaggatcacgtggcagctcgatgggcggtgctggg
tcatacggtggcttgatgggtgccgaaggattgcaagaagggtccctgagaacagaagaa
tcacagggaacatcgagcttgagagggtcctacagcgagtccttcactgggccactggat
ttcaatgagctggcgctgcgtgtgtctgagagcatccagagtcgaggtctcctccaggac
ctgatgacttactctgtgcaggggccaccaggccccccggggccacctggagtcagcaag
gtgtttgcatcctatggcaatgtcactgcagacctaatggacttcttcaggacttacggt
accatcccaggcccgcctggtgcaaagggagacatgggtcacccaggtcccaaaggagaa
cgtggaccgatggggcctccaggacgccagggcccaagaggaccaaagggcgaaaaagga
gagaaaggagaacaagtctacgttggcagaaggaaaaggagaagtgttgggagttggggt
ctgaaataa
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