Citrobacter portucalensis: FOB25_01890
Help
Entry
FOB25_01890 CDS
T06238
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpot
Citrobacter portucalensis
Pathway
cpot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOB25_01890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpot03400
]
FOB25_01890
Enzymes [BR:
cpot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOB25_01890
DNA repair and recombination proteins [BR:
cpot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOB25_01890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QET55249
LinkDB
All DBs
Position
372583..376029
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQHRYTLPAKAGDQRQLGELTGAACATLVAEIAEHHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDIETSAERFQADTL
SRFGNRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTESLANKAANTNLGFQKLPD
IAVQAQQKAPLDALRKFLEGFTGPVIFSVESEGRREALGELLARIKVAPKRILRLDEAVD
NGRYLMIGAAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQADVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLFNDVENIQKTADRLAELVPEARIGI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMESIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDDYIPDV
NTRLSFYKRIASAKGENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFMQELSERKTRIDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacatcgttacacgctcccggcgaaagctggcgatcagcgccagttaggt
gagcttaccggtgccgcctgcgcaacgctggtcgccgaaatcgccgaacatcacgcgggt
ccagtggtcctgatcgcgccggacatgcaaaatgcgctgcgtttgcatgatgaaattcgt
cagtttactgaccagatggtgatgaacctggccgactgggaaacgctaccctacgacagc
ttttctccccatcaggagattatctcctcgcggctctccacgctgtatcagctgcctgcc
atgcagcgcggcgtgctgatcgttccggtaaatacactgatgcagcgcgtttgtccgcac
agctatctgcacggtcatgcgctggtcatgaaaaagggccaacgactttcacgtgatgct
ctgcgtgaacagctggacagtgcgggctatcgccatgttgatcaggtcatggaacacggc
gaatatgccacgcgcggcgcgttgttggatttgttcccgatgggcagcgagttgccttat
cgtctggatttctttgatgacgaaatcgacagcctgcgtctgtttgataccgacacccag
cgcacgctggaagaagtcgatgccattaatttgcttcccgcacacgaattcccgactgac
aaaacggccatcgaactattccgtagccagtggcgcgatacctttgaggtgaaacgcgac
gccgaacatatttaccagcaggtcagcaaaggcacgttacctgcgggtattgaatactgg
caaccgctgtttttcagcgagccgctgccgccgctgttcagctacttccccgccaatacg
ttattggtgaataccggtgatatcgagaccagcgcagaacgcttccaggccgataccctg
tcgcgctttggaaatcgcggtgttgatccgatgcgcccgcttctgccgccggaatcgctg
tggctgcgggttgatgagctgttttctgaacttaaacgctggccgcgcgttcaactgaaa
accgagagtctggcgaacaaagcagcgaatactaacctcgggttccagaagctgccggat
atcgccgttcaggcacagcaaaaagcgccgttagatgcgttacgtaaattccttgaaggc
ttcaccggtccggtgattttctcggtggaaagtgaaggccgccgtgaagcacttggcgaa
ctgctcgcccgtatcaaagtggcgccgaagcggatattgcgactcgatgaagccgtagat
aacggtcgttatctgatgattggcgcagctgagcacggcttcatcgatagcaaacgcaat
ctggcgctgatttgtgaaagcgatctgcttggggaacgcgtggcgcgccgccgccaggat
tctcgtcgcaccatcaacccggataccttaattcgtaacctcgcagagctgcatcccggt
cagccggtggtgcatctggagcatggcgtgggtcgttatgccggtatgaccacgctggaa
gcgggcggcataaccggtgaatatctgatgctcacctatgccaacgacgccaaactgtac
gtgccggtgtcgtcactgcatctcatcagccgctatgcaggtggcgcagaagagaatgcg
ccgctgcataaacttggcggcgatgcctggtcacgtgcccgacagaaagccgctgagaag
gtgcgcgatgttgcggcagagctgctggatatttatgcccagcgcgcggcgaaagaaggc
tttgcctttaaacacgaccgtgaacagtaccagctgttttgcgacagcttcccgtttgaa
accacgcctgaccaggcgcaggcgattaacgcggtactcagcgatatgtgtcaaccgctg
gccatggaccgcctggtctgcggcgacgtcggctttggtaaaaccgaagtcgcgatgcgc
gcggcctttctcgccgtagagaaccacaagcaggttgccgtgctggtgccgaccaccctg
ctcgcacagcagcacttcgacaacttccgcgaccgctttgccaactggccggtacgcatt
gagatgttgtcccgtttccgtagcgccaaagagcaagcgcagattctggagcaagttgcc
gagggaaaaattgatattctcatcggcacgcacaaactgctgcaagcggatgtgaagtta
aaagatctgggtctgctgattgtcgatgaagagcaccgtttcggcgtgcgccacaaagaa
cgcatcaaggcgatgcgcgcagatgtcgatattctgaccctgacagcaacgcctattcca
cgtacgctcaatatggcaatgagcggcatgcgcgatctgtcgattatcgccacgccgccc
gctcgtcgtctggcggtcaaaaccttcgtgcgcgaatacgacaacctggtggtacgcgag
gcgatcctgcgtgaagttctgcgcgggggacaagtttattatctgtttaacgacgtcgaa
aacattcagaaaaccgctgacagattagcagaactggtgccggaagcgcgtattggtatc
ggtcacggacaaatgcgcgagcgcgaactggaacgcgtgatgaacgatttccaccatcag
cgttttaacgtgctggtgtgtaccaccattatcgaaaccgggatcgacatccccaccgct
aacaccatcatcatcgaacgagcggatcacttcggtttagcgcaattacaccagttgcgc
ggtcgtgtgggacgttctcaccaccaggcttacgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgacgcgcaaaaacgtctggaagccatcgcctcgctggaagatttgggt
gcaggttttgcgctggcgacccacgacctcgaaattcgcggcgccggggaattactgggt
gaagatcagagtggttccatggaaagcatcggcttctcactgtatatggaactgctggaa
aacgcggtcgatgcgctcaaagaagggcgtgaaccgtcactggaagatctcaccagccag
caaaccgaagttgaactgcgcatgccgtctctgctgccggatgactatatcccggatgta
aacacccgactgtcgttctacaagcgcattgccagtgcgaaaggcgaaaacgaactggaa
gaaattaaggttgagctgatagaccgttttggcttgctgcccgacccggctcgtacgctg
ctggatatcgcccgtttacgccagcaggcgcagaaactggggatcagaaagctcgaaggc
aatgaaaaaggcggtaccattgaatttgccgagaaaaaccacgtcaacccggtctggctg
attggtttactgcaaaagcagccgcagcacttccgtctggacggtccaacccggctgaaa
ttcatgcaggagttgagcgagcgtaaaacgcggatcgactgggtccgccagtttatgcgt
cagcttgaagaaaacgccgtagcataa
DBGET
integrated database retrieval system
