Citrobacter portucalensis: FOB25_11090
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Entry
FOB25_11090 CDS
T06238
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
cpot
Citrobacter portucalensis
Pathway
cpot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOB25_11090 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpot03019
]
FOB25_11090 (rhlB)
Enzymes [BR:
cpot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOB25_11090 (rhlB)
Messenger RNA biogenesis [BR:
cpot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOB25_11090 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QET56936
LinkDB
All DBs
Position
2348630..2349898
Genome browser
AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPTTQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacccaaaggtg
atagaagcccttgaaaataaaggctttcataactgtacgcccattcaggccctcgcgctg
ccgctaacgctggctggtcgtgatgttgccgggcaggcgcaaaccggtaccggaaaaacg
atggcgttcctgacgtcaacgtttcattatcttctctctcatcccgcgattgccgatcgc
aaggtgaaccaaccgcgtgcgttaattatggcgccaacgcgtgagttagccgtgcagatc
cacgccgatgccgagccgctggcacagaccactggtctgaaattaggcctggcgtatggc
ggcgacggttacgataaacagctgaaagtgctggaaagcggcgtcgatattcttatcggc
acgaccggtcgtctcatcgactatgcaaaacagaaccacattaatctgggcgcgattcag
gtcgtggtgctggatgaagccgatcgtatgtacgatctgggctttattaaagatatccgt
tggctgttccgtcgtatgccgccaaccacccaacgtctgaacatgctgttttctgcaacc
ctctcttaccgcgttcgcgaactggcgttcgaacagatgaataacgctgagtacgttgaa
gtcgaaccggaacagaaaactggccaccgcattaaagaagagctcttctacccttccaac
gaagagaaaatgcgtttgctgcaaacgctgattgaagaagagtggccagatcgcgccatt
gtttttgctaacaccaagcatcgttgtgaagatatctggggcagccttgctgcggacggt
catcgcgtcggtctgctgaccggtgacgtagcacagaaaaaacgtctgcgtattcttgat
gagttcacccgtggcgatctcgacattctcgttgcgacggatgtcgctgcgcgtggcctg
catatcccagcagtaacgcacgtatttaactatgacctgccggatgactgtgaagattac
gttcaccgaatcggtcgtaccggacgtgctggcgcaagcggtcactctatcagcctggct
tgtgaagagtacgcgctgaatttacccgcaatcgagacctatatcggccattcgattccg
gtcagcaaatataacccggatgcgctgatgaccgatctgccgaagccgttgcgcttaacg
cgcccgcgtacaggcaatggcccacgccgtaccggtggtgctccgcgtaatcgtcgtcgt
tcaggttaa
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