Citrobacter portucalensis: FOB25_13720
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Entry
FOB25_13720 CDS
T06238
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
cpot
Citrobacter portucalensis
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpot03019
]
FOB25_13720 (csrD)
Messenger RNA biogenesis [BR:
cpot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FOB25_13720 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QET57422
LinkDB
All DBs
Position
2879693..2881633
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKFTTRVHAVATAIDTHLVSRDVVA
LTPQIDELMVSVDIVRIELLQGGNVVYDHSRTSSYRPAGTNNLYREITVPLVKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTIAIAFIILMLFLSVRWLQRQLSGQELLEIRSTRILNGER
GPNVRGTVYEWPARTSSALDMLLTEIQNAREQRSRLDTLIRSYVAQDTKTGLSNRLFFDN
QLATLLEDQEKVGSHGVVMMVRLPDFTLLRDSWGITLAEEQISTLINLLSTFMTRYPGAL
LARYHRSDFAILLPHRTLKEAESIAGQLLKAVDALPANKMIDRADMVHIGICVCRSGQST
EQVMDHAEAATRNSVLQGGNSWSVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV
TREGRVHHRELMCRIFDGNEEVISAEYMPMVLQFGLAEEYDRLQISRLILLLGYWPQENL
AMQTTVESLIRPRFQRWLRDTLMQCEKSLRKRIIIELAEADVCQHISRLQPVIRLMNALG
VRIAVTQAGLTLVSTSWIKELNVELLKLHPSLVRNIDKRTENQLLVQSLVEACSETPTQV
YATGVRSRSEWHTLTERGVAGGQGDFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttcagcttttgtcacgctgcttactgggttaacgatcttc
gtgactctgatcggctgttcgctgagtttctacaacgctattcaatataagttcaccacg
cgcgttcatgcggtcgcgacggcgattgatacgcatctggtctccagagatgtcgttgcg
ttaaccccgcaaatcgatgaattgatggtttctgttgatatcgtgcgcatcgaactgttg
cagggcggaaatgtggtgtatgaccactcacgcaccagcagctaccgaccggcagggaca
aacaatctctaccgcgagattaccgtaccgttggtcaagcatccgggtatgtcattgcgt
ctggtttatcaggatccgatgggtaactatttccattcgctgatgaccaccgcgccgctc
acgatagccattgctttcattattctgatgctctttttgtctgtgcgctggcttcagcgt
cagctttcaggtcaagaactgctggagattcgttccacgcgtattctgaacggcgaacgt
ggaccgaacgtgcggggaacggtctatgaatggcctgcgcgtaccagtagcgcactcgat
atgctgctgactgaaattcaaaatgcccgcgagcaacgcagccgcctggatacgctgatt
cgttcctatgtcgcgcaggatacaaaaaccgggctaagcaaccgcttgttctttgataac
caactggccacgctgctggaagatcaggaaaaagtaggctcgcatggcgtcgtgatgatg
gtgcgcctgccggactttacgctgctgcgcgatagctggggaatcactctcgcggaagaa
caaatctcgacgctgatcaatttgttgtcgacttttatgacgcgctatccgggcgcgttg
ctggcgcgctaccaccgtagcgattttgctatcctactgccgcaccgtacgctgaaagag
gcggaaagcatcgccgggcaattattaaaagcggtagatgcgcttccagctaataaaatg
atcgatcgtgccgatatggttcatatcggtatttgcgtttgccgcagcggacagtcgacg
gaacaagtaatggatcacgccgaagcggctacgcggaattcggtattgcagggcggaaac
agctggtcggtctatgatgactcgctgccggaaaaaggtcggggcaatgtacgctggcga
acgctgatcgaacagatgctcagccggggcgggccaagaatttatcaaaagcctgcggta
acgcgcgaaggccgggtgcaccatcgggagttgatgtgccgtatttttgatggcaacgaa
gaggtcatttcggcggaatatatgccgatggtcctgcaatttggtctggcagaagaatat
gaccgtttgcagataagccgtctgatcctgcttttgggctactggccgcaggaaaatctg
gcgatgcagacaacggttgaatcgcttattcgtccacgttttcagcgctggctgcgtgat
acgctgatgcagtgcgaaaaatcattacgcaaacgcataattattgaacttgctgaggca
gatgtctgtcaacatatcagccggttacagcctgtcatcagattgatgaatgcgctgggc
gtgcgtattgccgttacgcaggcggggttaacgctggtgagcaccagttggatcaaagag
cttaacgttgagttattgaagcttcatccaagtctggtgaggaacattgataagcgaacg
gaaaatcagcttctggttcaaagcctggtggaggcctgttcggaaacacccacgcaggtt
tacgccacgggcgtacgttcgcgtagtgagtggcatacgctgacagaacgcggagttgcg
ggtgggcaaggagatttttttgccgcatcacaaccacttgacactaacgtgaaaaaatat
tcgcaaagatactcggtttaa
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