Citrobacter portucalensis: FOB25_14155
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Entry
FOB25_14155 CDS
T06238
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpot
Citrobacter portucalensis
Pathway
cpot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOB25_14155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpot03019
]
FOB25_14155
03009 Ribosome biogenesis [BR:
cpot03009
]
FOB25_14155
Enzymes [BR:
cpot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOB25_14155
Messenger RNA biogenesis [BR:
cpot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOB25_14155
Ribosome biogenesis [BR:
cpot03009
]
Prokaryotic type
rRNA helicases
FOB25_14155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QET57502
LinkDB
All DBs
Position
2969783..2971711
Genome browser
AA seq
642 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLAKMQPEEELDIET
LAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRDRNDRGGEDRPRRE
RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG
DVLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGRFSGERREGGRGEGRNFSGERREG
GRGDGRRFSGERREGNRGPRRDDSSAPRRDDSAGRRRFGGDA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggccgcgatgttctgggtatggcccagacaggtagcggcaaaactgcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcaccgacccgcgaactggcggttcaggtagcagaagccatgacggatttctctaaacac
atgcgcggcgtgaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgt
gccctgcgtcaggggccacagatcgtcgtcggtacgccgggtcgtctgctggatcacctg
aagcgcggtactctggacctctccaaactgagcggtctggtactggacgaagctgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgtattacccgccgc
tttatgaaagagccgcaggaagtacgtattcagtccagcgttactacccgtcctgacatc
agccagagctactggacggtgtggggcatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcagaagactttgatgcggcgattattttcgtacgtaccaaaaatgcgaccctggaa
gtagcagaagcgctggagcgtagcggttatagcagcgctgcactgaacggcgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagatggccgtctggatattctgatt
gcaaccgacgttgcggcccgtggtctggacgttgagcgtatcagcctggttgtcaactac
gacatcccgatggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgcgggtcgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatc
gaacgcaccatgaagctgactattccggaagtagaactgccgaacgcagatctgctgggc
aaacgccgtctggaaaaattcgctgctaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgctctgctggcgaaaatgcagccggaagaagagctggatatcgaaacg
ctggcagctgcactgctgaaaatggctcagggcgaacgtcctctgatcctgccgccagat
gcgccgatgcgtccgaaacgcgaattccgcgatcgtgatgaccgtggtccgcgtgaccgc
aacgatcgtggccctcgtgaccgtaatgaccgtggtggtgaagaccgtccgcgtcgtgaa
cgtcgtgatgttggtgacatgcagctgtaccgcattgaagtgggccgtgatgacggtgtt
gaagttcgtcatatcgttggtgcgattgctaacgaaggtgatatcagcagccgttacatc
ggtaacatcaagctgtttgcttcccactccaccatcgaactgccgaaaggtatgccgggc
gacgtgctgcagcactttacccgtactcgcatcctgaacaagccgatgaacatgcagctg
gttggcgatgcagttccgcacaccggtggtgagcgtcgtggcggtggtcgtttcagcggt
gagcgtcgtgaaggcggtcgcggtgaaggtcgtaactttagcggcgaacgtcgtgaaggc
ggtcgtggcgatggccgtcgtttcagcggcgaacgtcgtgaaggcaaccgtggtccgcgt
cgtgacgattcttctgctccgcgtcgtgatgactctgctggtcgtcgtcgtttcggcggt
gatgcataa
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