Citrobacter portucalensis: FOB25_14845
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Entry
FOB25_14845 CDS
T06238
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cpot
Citrobacter portucalensis
Pathway
cpot02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FOB25_14845 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpot03021
]
FOB25_14845 (rpoD)
Transcription machinery [BR:
cpot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FOB25_14845 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
QET57629
LinkDB
All DBs
Position
complement(3096672..3098519)
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AA seq
615 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEDGDDDSSDDDNSIDPELAREKFGELRTQYEITRDTIKAK
GRSHAAAQEEIQKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLQQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccaaatgatcaatgacatgggtattcaggtgatggaagaagcacct
gatgccgatgatctgctgcttgctgaaacctccaacagcaccgatgaagacgcggaagaa
gcggctgcccaggttctgtccagcgttgagtccgaaatcggtcgtacgactgacccggtc
cgcatgtacatgcgtgaaatgggtaccgttgaactgttaacccgcgaaggcgaaatcgac
atcgctaaacgcatcgaagacgggattaaccaggttcaatgctccgttgccgaatacccg
gaagctatcacctacctgcttgagcagtacgatcgcgtagaagctgaagaagcacgtctt
tccgatctgatcactggctttgtcgatccaaatgcggaagaagacatggcgccaacggcg
acccacgtcggttctgaactctctcaggaagagatggatgacgatgaagacgaagatgaa
gaagatggcgacgacgacagcagcgatgatgacaacagcatcgaccctgagttagcgcgt
gaaaaattcggtgaactgcgtactcagtacgaaatcactcgcgacaccatcaaagcgaaa
ggccgcagccatgctgccgcgcaggaagaaattcagaagctgtctgaagtgttcaaacag
ttccgcctggtgccgaagcagttcgactacctggtaaacagcatgcgcgtcatgatggac
cgcgtgcgtactcaggaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccg
aagaaaaacttcatcaccctgtttactggcaatgaaaccagtgaaacctggttcaacgcg
gcaatcgcgatgaacaaaccgtggtctgaaaaactgcacgacgtggcagatgacgttcac
cgcggcctgcagaaactgcagcagattgaagaagaaaccggcctgaccatcgagcaggtt
aaagatatcaaccgtcgcatgtccatcggtgaagcgaaagcacgccgtgcgaaaaaagag
atggttgaagcgaacttacgtctggttatctctatcgctaaaaaatacaccaaccgtggc
ctgcagttcctggatctgattcaggaaggtaacatcggtctgatgaaagcggttgataag
tttgaataccgtcgtggttacaagttctccacctatgcaacctggtggatccgtcaggcg
atcacccgttcgatcgcggatcaggcgcgtaccatccgtatcccggtacatatgattgag
actatcaacaagctcaaccgtatctcccgtcagatgctgcaagagatgggccgcgagccg
acgccagaagaactggctgagcgcatgctgatgccggaagacaagatccgtaaagtgctg
aaaattgctaaagaacctatctccatggaaacgccgatcggcgacgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgctggactctgctaccaccgag
agcctgcgtgccgcaacgcacgacgttctggctggcctgaccgcccgtgaagcgaaagtt
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactg
cgccacccgagccgctctgaagtactgcgtagcttcctcgacgattaa
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