Citrobacter portucalensis: FOB25_16085
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Entry
FOB25_16085 CDS
T06238
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cpot
Citrobacter portucalensis
Pathway
cpot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FOB25_16085 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpot03400
]
FOB25_16085 (recB)
Enzymes [BR:
cpot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FOB25_16085 (recB)
DNA repair and recombination proteins [BR:
cpot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FOB25_16085 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QET57854
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All DBs
Position
3357716..3361261
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AA seq
1181 aa
AA seq
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MNDAAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRETTDNPLYARLLDEIADKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYSLPRDIA
QVVFETWKGPQALLRDIDRYLQGEAPVIKAPPSDDETLASRHEQILARINQIKQQWRDSV
DELDGLMEASGIDRRKFNRGNQGKWIEKISAWAQEETQSYQLPDALEKFSQRFLEERTKA
GGITPQHPLFVAIDELLSEPLTLRDLVITRALAEIRSAVAEEKRRRGELGFDDMLSRLDA
ALRSESGDALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNSVNTLFSQMDDAFMFREIPFSPVKS
AEKNQALRFVLHGETQPAMSMWLMEGESCGVGDYQSYMAQVCATQIRDWLKAGHSGAAQL
VSGKASSPVRASDISVLVRSRQEAALVRDALTQLAIPSVYLSNRDSVFETLEAQELLWVL
QAVMTPERENTLRSALATSMMGLNAQDIEALNTDENAWDAVVEEFDGYRQIWHKRGVMPM
LRALMTARQIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLSQHILEPDS
NASSQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRSSFEAVLDL
SDAVESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPMDAVGLRGAIEALCSNDIACQTPAQPDGEPWQVAQAVSSELSAKILQRKPGDS
WRVTSYSGLQQRGQGIAQDLIPRLDIDAAGVGEVIEESGLTPHQFPRGASPGTFLHSLFE
DLDFTQPVDPHWVEEQLALGGYDAHWTPVLTEWLDAILQAPLNETGVSLSQLSAREKQVE
MEFYLPISQPLMANQLDALIRQYDPLSAGCPALDFMQVRGMLKGFIDLVFRHQGRYYLLD
YKSNWLGEDSSAYTQQAMASAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDSENPQQGIYATRPDGELIALMDEMFAGAVQETML
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgccgctgagtcccttgatccactgcgcttgcccctgacgggcgagcgcctg
attgaagcctctgcgggcaccggtaaaacctttaccatcgccgccctgtatttacgttta
ctgcttggactgggcggctctgccgcctttcctcgtcctctgaccgtcgaagaactgctg
gtggttaccttcaccgaggcggctaccgaagagttgcgtggtcgaattcgtagcaatatt
catgaactgcgaattgcctgcctgcgtgaaaccaccgacaacccgctatatgcccgtttg
ttagatgaaattgccgataaaaaacaggccgcgcagtggctgctattggctgaaagacag
atggatgaagcggcggtgtttaccatccacggcttttgtcagcgtatgctcagtctcaat
gcctttgagtcaggcatgctgttcgaacagcagctgatagaagatgaatcgctgctgcgc
tatcaggcctgcgcggacttctggcgtcggcactgctactcgctgccccgcgacattgcg
caggtggtttttgaaacgtggaaaggaccgcaagcgctgctgagagatatcgatcgctat
ctgcagggggaagcgccggttatcaaggcgccaccgtctgatgacgaaacgctggcctcc
cggcatgaacaaattctcgcgcgcattaaccagatcaagcagcaatggcgtgattctgtt
gatgagctggatggcctgatggaagcctccggaattgaccggcgtaaatttaatcgcggt
aatcagggcaagtggatcgaaaagatcagcgcgtgggcgcaggaagaaacacaaagttac
cagcttcctgacgcgctggagaaattctcacagcgttttctggaagagcgaaccaaagcg
ggcgggataacccctcagcacccgctgtttgtagctattgatgaactgcttagcgaaccg
ttaactctccgcgatctggtgatcacccgggcgctggcggagatccgctcggcagttgcc
gaggaaaaacgtcgccgcggcgagctgggttttgacgatatgctcagccgtctggatgcg
gcgttgcgcagtgaaagcggcgatgcgctggcgacggctattcgtactcgtttcccggtc
gccatgatcgatgaattccaggataccgatccgcagcagtaccgtatttttcgtcggatc
tggcagcatcagccggataccgcactgctgctaattggtgatccgaaacaggcaatttac
gcgtttcgcggcgcggatatcttcacctatatgaaggcgcgcagcgaagtcagcgcacac
tatacgcttgataccaactggcgttcggcccccggcatggtcaatagcgtgaatacgctt
ttcagccagatggacgacgcctttatgttccgcgaaatccctttcagcccggtaaaatcc
gcagaaaaaaaccaggcgttacggtttgttttgcacggcgaaacgcagccagctatgagt
atgtggctgatggaaggagaaagttgcggcgtaggcgattatcagagctacatggcccag
gtgtgcgccacacaaattcgcgactggcttaaagccgggcattctggcgcagcgcaactg
gtcagtggcaaagcatccagcccggtacgcgcgtcagatatcagcgtactggtgcgtagc
cgccaggaagcggcgctggtccgtgatgcgctgacgcaactggccattccctctgtctac
ctctccaaccgtgacagcgtatttgaaacactggaagcgcaggagttgctatgggtgctg
caggcggtgatgacgccggaacgtgagaacacgttgcgtagcgcgctggcgacctcaatg
atggggctgaatgcgcaggatattgaagcgttaaataccgacgagaatgcctgggatgcg
gtggtcgaagaattcgacggctatcgtcagatctggcataaacgcggcgtgatgccgatg
ctacgtgcgctgatgacggctcgccagattgcagagaacctgctggcgacggcgggaggc
gaacgtcgactgaccgacattttacatatcagcgaactgttgcaggaagcgggctcgcag
ctggaaagcgagcatgcgctggtgcgctggttgtcccagcatattcttgaacccgacagc
aacgcgtccagccagcagctcaggctggaaagcgacaagcatctggtcaaaatcgtcacc
atccataaatcgaaagggctggagtatccgctggtctggctgccgtttatcaccaatttc
cgcgttcaggatcaggctttctaccacgatcgtagctcttttgaagccgtgctggatctc
agcgatgctgtggagagcgttgagctggccgaagcggagcgtttggcagaagatctgcgt
ttgctttatgtcgcgctaacccgttcggtatggcactgcagccttggcgttgcgccgttg
gtgcgacgccggggcgataaaaaaggggataccgatgtgcatcagagtgcccttggccgc
ctgttgcaaaaaggcgagccgatggatgccgtgggtctgcgtggcgcgattgaagcgctt
tgcagcaatgatattgcttgccagacacccgcgcagcctgacggtgaaccctggcaggtt
gcgcaggctgttagcagcgaactgagtgcaaaaatactgcagcgtaagcccggtgatagc
tggcgcgtgaccagttattccggtttgcaacagcgtggacagggtatcgcgcaggatctg
atcccaagactggatatcgatgccgcaggcgtcggtgaggttattgaagagtcagggctt
acaccgcatcagtttccgcgcggcgcttcgccgggtacattcttgcatagcctgtttgaa
gacctcgattttacgcaaccggtggatccgcattgggtcgaggagcaactggcgttgggc
ggttatgacgcacactggacgccggttttgaccgaatggctggacgccattttgcaggcg
cctctcaacgagacgggcgtgagtttgagccagctatccgcgcgtgaaaaacaggtggag
atggagttttatctgccgatttcgcagccgttgatggccaaccagcttgatgcgttaatt
cgccaatacgatccgctatcggcggggtgccctgcgttggactttatgcaggttcgcggc
atgctgaaaggctttattgacctggtattccgccaccaggggcgttattacctgctcgat
tacaaatcgaactggctgggcgaagacagctccgcctatacgcagcaggcaatggcctct
gccatgcaggcgcatcgctacgaccttcaataccaactttataccctcgcgctgcatcgc
tacttacgccatcgcattgctgattacgattatgaacgccattttggcggcgttatctat
ctcttcctgcgcggcgttgacagtgaaaatccgcagcagggaatttacgcgacccgacct
gacggagagttgattgcgttgatggacgagatgtttgccggtgcggtgcaggagacgatg
ttatga
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