Citrobacter portucalensis: FOB25_16090
Help
Entry
FOB25_16090 CDS
T06238
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cpot
Citrobacter portucalensis
Pathway
cpot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FOB25_16090 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpot03400
]
FOB25_16090 (recD)
Enzymes [BR:
cpot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FOB25_16090 (recD)
DNA repair and recombination proteins [BR:
cpot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FOB25_16090 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Helicase_RecD
SH3_13
Viral_helicase1
AAA_11
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
MukB
AAA_28
AAA_16
UvrD_C
DUF6079
Mg_chelatase
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QET57855
LinkDB
All DBs
Position
3361258..3363087
Genome browser
AA seq
609 aa
AA seq
DB search
MTIQKRFLEAVEQKQLRPLDAQFALAVAGSDNPAVALAAALLSREAGEGHVCLPLSRLSL
SEDAHPLLSAWLAETGEPEDWAECLLASSAVSRGEQPTPLVLYGDRLYLNRMWHNERTVA
RFFSEVNHAIEVDEQRLTHTLAALFPPSEGVNWQKVAAAVALTRRISVISGGPGTGKTTT
VARLLAVLIQMADGERCRIRLAAPTGKAAARLTASLGAALRELPLTDEQKKRIPDDASTL
HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQ
LASVEAGAVLGDICAFVGDGFTPERARQLSRLTGSAIPAGSGIQAAALRDSLCLLQKSYR
FGSDSGIGQLAAAINRGDKTAIKTVFQQGFSDIEKRTLHSSEDYAAMLDEALAGYGHYLD
LLHEGAEPGAVIQAFNEYQLLCALREGPFGVSGLNERIEQVMAQKRKIHRSTHSRWYEGR
PVMIARNDSSLGLFNGDIGIALDRGQGLRVWFALPDGSIKSVQPSRLPEHETTWAMTVHK
SQGSEFDHAALILPSQHSPVVTRELVYTAVTRARRRLSLYADERILSRAIATRTERRSGL
SALFNDGMM
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacaatccagaaacgatttctggaggctgttgagcaaaaacagctccggcctctggat
gctcagttcgcgctggcggttgccggaagtgacaaccctgccgttgcgctggctgcggcg
ttgctcagccgtgaagcgggagaagggcacgtctgcttaccgctttcacggttatctctg
agcgaggacgcgcatcctctgttaagcgcctggctcgctgaaacgggcgagccagaagac
tgggcggaatgtctgctggcatccagtgcggtaagccgtggcgagcaacccacgccgctg
gtgctgtacggcgatcgcctgtatctgaaccggatgtggcacaacgaacgtaccgtagct
cgctttttcagtgaagtgaaccacgccattgaagtggatgaacaacggctgacccacacg
ctggcggcgctgtttccgccatcggagggggttaactggcaaaaagtagccgctgctgtt
gcgctcacccgccggatatcggtgatctccggcggaccggggacgggaaaaacgacaacg
gtcgcaaggctgctggcggtgttgattcaaatggccgacggtgagcgctgtcgtattcga
ctggcggcgccaacgggaaaagcggctgcgcgcctgaccgcctcactaggcgcggcgcta
cgagaactaccgctaaccgatgagcaaaagaaacgcatccccgatgacgccagtacgctg
catcgattattaggcgctcagcctggcagtcagcgtctgcgtcatcatgcgggaaacccg
ctgcatttggatgtgctggtggtggatgaagcctcgatgattgatttgccgatgatgtcg
cgccttatcgatgcgctgccgccgcacggacgggtgatttttctgggcgatcgcgaccag
ctcgcttccgtcgaagcgggggccgtgctgggggatatctgtgctttcgttggtgacggg
tttaccccggaacgcgcccgccagctcagtcgcctgaccgggagcgctattcctgccggt
tcgggaattcaggcagcagcgttgcgcgacagtctgtgcctgctgcaaaagagctaccgt
ttcggcagcgattccggaatcggtcagttggccgcggcgattaatcgcggcgacaaaact
gcgataaaaacggtgttccagcagggatttagcgacatcgaaaaacgcacgctacacagc
agcgaggattatgccgcgatgctggatgaggcgctggcgggatatgggcactacctggat
ttgttgcacgagggtgccgagccgggggctgtcattcaggccttcaatgagtatcagctg
ctatgcgccctgcgggaaggtccgtttggcgttagtggtttgaatgaacgtattgagcag
gtgatggcgcaaaaacgtaaaattcatcgttcgacgcatagccgctggtatgagggaagg
ccggtgatgatcgcgcgcaatgacagttcgctgggattatttaacggtgatatcggcatt
gcccttgaccgtggacagggcctgagggtgtggtttgcgttgccggatggttccatcaaa
tcggtgcagcccagccgcttgcctgaacatgaaaccacctgggcgatgacggtgcacaaa
tcgcagggatctgagtttgaccacgcggcgttgattttacccagccagcattcacccgtg
gttacccgcgagctggtctataccgccgttacccgcgcgcgccgccgcctgtcgctgtat
gccgatgagcggatattgagccgcgccattgccacccgtaccgaacgtcgcagcggactg
tcagcattatttaatgacggcatgatgtag
DBGET
integrated database retrieval system
